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Questions and answers from the final exam of a cell biology and biochemistry course, covering topics such as transport in the cell, organelles, nucleic acids, protein structure, and enzyme kinetics.
Typology: Exams
1 / 31
Choose the single best answer
(a) transport of material to the Golgi
(b) clean-up, recycling, and disposal of macromolecules
(c) sorting of transport vesicles
(d) the storage of excess macromolecules
biochemical reactions that generate harmful, highly reactive oxygen species. These chemicals
are both generated and broken down in the same location.
(a) Nucleosomes
(b) Lysosomes
(c) Peroxisomes
(d) Endosomes
permeable boundaries around and inside cells?
(a) sugars
(b) fatty acids
(c) amino acids
(d) nucleotides
but not true of RNA?
(a) It contains uracil.
(b) It contains thymine.
(c) It is single-stranded.
(d) It has 5′-to- 3 ′ directionality.
polymers, the number of possible sequence combinations that can be created for an RNA
molecule made of 100 nucleotides is.
(a) 100
4
(b) 4
100
(c) 4 × 100
(d) 100/
These weak interactions also produce stable, highly specific interactions between molecules.
Which of the factors below is the most significant in determining whether the interaction will
be transient or stable?
(a) the size of each molecule
(b) the concentration of each molecule
(c) the rate of synthesis
(d) surface complementarity between molecules
NaOH stock solution. The molecular weight of NaOH is 40. How many grams of solid NaOH will
you need to weigh out to obtain a 500 mL solution that has a concentration of 10 M?
(a) 800 g
(b) 200 g
(c) 400 g
(d) 160 g
atom that is oxidized will experience which of the following with respect to the electrons in its
outer shell?
(a) a net gain
(b) a net loss
(c) no change
(d) an equal sharing
split by the addition of in a process called.
(a) ATP, phosphorylation.
(b) water, hydrolysis.
(c) hydroxide, hydration.
(d) acetate, acetylation.
The maximum velocity ( V max
) of an enzymatic reaction is an important piece of information
regarding how the enzyme works. What series of measurements can be taken in order to infer
the maximum velocity of an enzyme- catalyzed reaction?
(a) the rate of substrate consumption after the system reaches equilibrium, for several reactant
concentrations
(b) the rate of product consumption shortly after mixing the enzyme and substrate
(c) the rate of substrate consumption at high levels of enzyme concentration
(d) the rate of substrate consumption shortly after mixing the enzyme and substrate, for several
substrate concentrations
intermediate followed by a condensation step that completes the process. Both amino acids are
shown in the figure below.
In the condensation step, is displaced by.
(a) OH, NH 3
(b) ADP, NH 2
(c) ATP, NH 3
(d) phosphate, NH 3
(a) Peptide bonds are the only covalent bonds that can link together two amino acids in proteins.
(b) The polypeptide backbone is free to rotate about each peptide bond.
(c) Nonpolar amino acids tend to be found in the interior of proteins.
(d) The sequence of the atoms in the polypeptide backbone varies between different proteins.
(a) They assist polypeptide folding by helping the folding process follow the most energetically
favorable pathway.
(b) They can isolate proteins from other components of the cells until folding is complete.
(c) They can interact with unfolded polypeptides in a way that changes the final fold of the
protein.
(d) They help streamline the protein-folding process by making it a more efficient and reliable
process inside the cell.
Which of the following proteins do you expect to have a coiled- coil domain?
(a) insulin
(b) collagen
(c) myoglobin
(d) porin
(a) A-T
(b) T-A
(c) G-C
(d) C-G
of the cellular processes, increasing the pool of ADP. As the relative amount of ADP molecules
increases, they can bind to glycolytic enzymes, which will lead to the production of more ATP.
The best way to describe this mechanism of regulation is.
(a) feedback inhibition.
(b) oxidative phosphorylation.
(c) allosteric activation.
(d) substrate-level phosphorylation.
when injected into mice, and a second that is harmless_._ He observed that pathogenic bacteria
that have been killed by heating can no longer cause an infection. But when these heat- killed
bacteria are mixed with live, harmless bacteria, this mixture is capable of infecting and killing a
mouse. What did Griffith conclude from this experiment?
(a) The infectious strain cannot killed by heating.
(b) The heat-killed pathogenic bacteria “transformed” the harmless strain into a lethal one.
(c) The harmless strain somehow revived the heat-killed pathogenic bacteria.
(d) The mice had lost their immunity to infection with S. pneumoniae.
specialized cells are haploid. What is the total number of chromosomes found in each of the
gametes (egg or sperm) in your body?
(a) 22
(b) 23
(c) 44
(d) 46
(a) Is the individual genetically female or male?
(b) Do any of the chromosomes contain pieces that belong to other chromosomes?
(c) Does the individual have an extra chromosome?
(d) Do any chromosomes contain point mutations?
DNA- binding proteins and protein complexes must be able to gain access to the DNA molecule.
Chromatin- remodeling complexes provide this access by.
(a) recruiting other enzymes.
(b) modifying the N-terminal tails of core histones.
(c) using the energy of ATP hydrolysis to move nucleosomes.
(d) denaturing the DNA by interfering with hydrogen-bonding between base pairs.
location, and combination of these modifications, these changes may promote the formation of
heterochromatin. What is the result of heterochromatin formation?
(a) increase in gene expression
(b) gene silencing
(c) recruitment of remodeling complexes
(d) displacement of histone H
centrifugation. These extracts provide the proteins required for DNA replication. Your DNA
template is a small, double- stranded circular piece of DNA (a plasmid) with a single origin of
replication and a single replication termination site. The termination site is on the opposite side
of the plasmid from the origin.
Which of the following statements is true with respect to this in vitro replication system?
(a) There will be only one leading strand and one lagging strand produced using this template.
(b) The leading and lagging strands compose one half of each newly synthesized DNA strand.
(c) The DNA replication machinery can assemble at multiple places on this plasmid.
(d) One daughter DNA molecule will be slightly shorter than the other.
” mutant form of DNA polymerase in which the 3′- to- 5 ′
exonuclease function has been destroyed but the ability to join nucleotides together is
unchanged. Which of the following properties do you expect the mutant polymerase to have?
(a) It will polymerize in both the 5 ′-to- 3 ′ direction and the 3 ′-to- 5 ′ direction.
(b) It will polymerize more slowly than the normal Exo
polymerase.
(c) It will fall off the template more frequently than the normal Exo
polymerase.
(d) It will be more likely to generate mismatched base pairs.
replication fork? D
A. Holliday junction cut and ligated
B. strand invasion
C. DNA synthesis
D. DNA ligation
E. double-strand break
F. nucleases create uneven strands
Which of the following is the correct order of events during homologous recombination?
(a) E, B, F, D, C, A
(b) B, E, F, D, C, A
(c) C, E, F, B, D, A
(d) E, F, B, C, D, A
Which of the following statements is true?
(a) The two genes must be transcribed into RNA using the same strand of DNA.
(b) If gene A is transcribed in a cell, gene B cannot be transcribed.
(c) Gene A and gene B can be transcribed at different rates, producing different amounts of RNA
within the same cell.
(d) If gene A is transcribed in a cell, gene B must be transcribed.
attach in an RNA molecule is pointed to by arrow.
(a) 1.
(b) 3.
(c) 4.
(d) 5.
(a) a decrease in the amount of sigma factor
(b) a decrease in the amount of RNA polymerase
(c) a mutation that introduced a stop codon into the DNA that precedes the gene’s coding
sequence
(d) a mutation that introduced extensive sequence changes into the DNA that precedes the gene’s
transcription start site
mRNA in various cell types, three of which are shown in Figure B below. The lines connecting the
exons that are included in the mRNA indicate the splicing. From your experiments, you know that
protein translation begins in exon 1. For all forms of the mRNA, the encoded protein sequence is the
same in the regions of the mRNA that correspond to exons 1 and 10. Exons 2 and 3 are alternative
exons used in different mRNA, as are exons 7 and 8. Which of the following statements about exons
2 and 3 is the most accurate?
(a) Exons 2 and 3 must have the same number of
nucleotides.
(b) Exons 2 and 3 must contain an integral number of
codons (that is, the number of nucleotides divided
by 3 must be an integer).
(c) Exons 2 and 3 must contain a number of nucleotides
that when divided by 3, leaves the same remainder
(that is, 0, 1, or 2).
(d) Exons 2 and 3 must have different numbers of
nucleotides.
(a) protein
(b) DNA
(c) RNA
(d) all came to be at the same time
irreversibly during development. Which of the following statements about these experiments is
true?
(a) Because the donor nucleus is taken from an adult animal, the chromosomes from the nucleus
must undergo recombination with the DNA in the egg for successful development to occur.
(b) The embryo that develops from the nuclear transplant experiment is genetically identical to
the donor of the nucleus.
(c) The meiotic spindle of the egg must interact with the chromosomes of the injected nuclei for
successful nuclear transplantation to occur.
(d) Although nuclear transplantation has been successful in producing embryos in some mammals
with the use of foster mothers, evidence of DNA alterations during differentiation has not
been obtained for plants.
(a) Transcriptional regulators usually interact with the sugar–phosphate backbone on the outside
of the double helix to determine where to bind on the DNA helix.
(b) Transcriptional regulators will form hydrogen bonds, ionic bonds, and hydrophobic
interactions with DNA.
(c) The DNA-binding motifs of transcriptional regulators usually bind in the major groove of the
DNA helix.
(d) The binding of transcriptional regulators generally does not disrupt the hydrogen bonds that
hold the double helix together.
Note: Questions 33 to 34 use the following information and the data in the figure below.
You are interested in understanding the gene regulation of Lkp1, a protein that is normally
produced in liver and kidney cells in mice. Interestingly, you find that the LKP1 gene is not
expressed in heart cells. You isolate the DNA upstream of the LKP1 gene, place it upstream of
the gene for green fluorescent protein (GFP), and insert this entire piece of recombinant DNA
into mice. You find GFP expressed in liver and kidney cells but not in heart cells, an expression
pattern similar to the normal expression of the LKP1 gene. Further experiments demonstrate
that there are three regions in the promoter, labeled A, B, and C in the figure below, that
contribute to this expression pattern. Assume that a single and unique transcription factor
binds each site such that protein X binds site A, protein Y binds site B, and protein Z binds site C.
You want to determine which region is responsible for tissue- specific expression, and create
mutations in the promoter to determine the function of each of these regions. In the figure
below, if the site is missing, it is mutated such that it cannot bind its corresponding
transcription factor.
(a) factor X
(b) factor Y
(c) factor Z
(d) none of the above
(a) factors X and Y
(b) factors X and Z
(c) factors Y and Z
(d) factor X only
(a) do not code for proteins.
(b) act in the nucleus.
(c) are packaged with other proteins to form RISC.
(d) form base pairs with mRNA molecules.
(a) Pseudogenes code for microRNAs.
(b) Pseudogenes share significant nucleotide similarity with functional genes.
(c) Pseudogenes are no longer expressed in the cell.
(d) There are estimated to be approximately 20,000 pseudogenes in the human genome.
(a) For protein-coding genes, homologous genes will show more similarity in their amino acid
sequences than in their nucleotide sequences.
(b) Fewer than 1% of human genes have homologs in the nematode and the fruit fly.
(c) Most homologous genes arose by gene duplication.
(d) A gene in humans that has homologs in plants and prokaryotes will show the same level of
similarity in nucleotide sequence when the human and prokaryotic sequences are compared as
when the human and chimpanzee sequences are compared.
(a) About 50% of the human genome is made up of mobile genetic elements.
(b) More of the human genome comprises intron sequences than exon sequences.
(c) About 1.5% of the human genome codes for exons.
(d) Only the exons are conserved between the genomes of humans and other mammals.
indicated in the figure below.
If you were to cut this circular piece of DNA with both XhoI and SmaI, how many fragments of
DNA would you end up with?
(a) 1
(b) 2
(c) 3
(d) 4
because.
(a) heat disrupts the hydrogen bonds holding the sugar–phosphate backbone together.
(b) DNA is negatively charged.
(c) heat disrupts hydrogen-bonding between complementary nucleotides.
(d) DNA is positively charged.
brand- new virus that has recently been introduced into the human population. She has just
developed a new assay that allows her to detect the virus by using PCR products made from the
blood of infected patients. The assay uses primers in the PCR assay that hybridize to sequences
in the viral genome.
Your friend is distraught because of the result she obtained (see Figure below) when she looked
at PCR products made using the blood of three patients suffering from the viral disease, using
her own blood, and using a leaf from her petunia plant.
You advise your friend not to panic, as you believe she is missing an important control. Which
one of the choices listed below is the best control for clarifying the results of her assay? Explain
your answer.
(a) a PCR assay using blood from a patient who is newly infected but does not yet show
symptoms
(b) a PCR assay using blood from a dog
(c) a PCR assay using blood from an uninfected person
(d) repeating the experiments she has already done with a new tube of polymerase
(a) They cannot be incorporated into DNA by DNA polymerase.
(b) They are incorporated into DNA particularly well by DNA polymerases from thermophilic
bacteria.
(c) Incorporation of a dideoxyribonucleoside triphosphate leads to the termination of replication
for that strand.
(d) Dideoxyribonucleoside triphosphates are more stable than deoxyribonucleoside triphosphates.
(a) phospholipids
(b) glycolipids
(c) sterols
(d) triacylglycerides
(a) at the Golgi apparatus
(b) at the endoplasmic reticulum
(c) at the plasma membrane
(d) in the mitochondria
(e) on ribosomes
in the figure below. Which type of defect described below is the most likely to cause the
redistribution of that protein around the entire cell, shown in the figure below?
(a) a nonfunctional protein glycosylase
(b) the deletion of a junctional protein
(c) the truncation of a protein found in the extracellular matrix
(d) a nonfunctional flippase
(a) Gene amplification of a tumor suppressor gene is less dangerous than gene amplification of a
proto-oncogene.
(b) Cells with one functional copy of a tumor suppressor gene will usually proliferate faster than
normal cells.
(c) Inactivation of tumor suppressor genes leads to enhanced cell survival and proliferation.
(d) Individuals with only one functional copy of a tumor suppressor gene are more prone to
cancer than individuals with two functional copies of a tumor suppressor gene.
(a) a secondary tumor in a different part of the body that arises from a cell from the primary
tumor.
(b) a cell that is dividing in defiance of normal constraints.
(c) a part of the primary tumor that has invaded the surrounding tissue.
(d) the portion of the cancerous tumor that displays genetic instability.
into a cell with the properties of ES cells.
(a) chromosomes
(b) viruses
(c) hormones
(d) transcription factors
(a) the female who donated the egg.
(b) the adult who donated the cell for nuclear transplantation.
(c) both the female who donated the egg and the adult who donated the cell for nuclear
transplantation.
(d) the foster mother in which the embryo is placed.
(a) The DNA in the nucleus of cells produced for therapeutic cloning is genetically identical to
the donor genome, whereas in cells produced for reproductive cloning it is not.
(b) Reproductive cloning requires a supply of fertilized donor egg cells, whereas therapeutic
cloning requires unfertilized egg cells.
(c) Therapeutic cloning requires nuclear transplantation, whereas reproductive cloning does not.
(d) Embryos are placed into foster mothers during reproductive cloning but not during therapeutic
cloning.
(a) can only be produced in the laboratory.
(b) can give rise to all the tissues and cell types in the body.
(c) can only give rise to stem cells.
(d) is considered to be terminally differentiated.
a stock of.
(a) proliferating precursor cells.
(b) cells more apically located than the terminally differentiated cells.
(c) Wnt proteins.
(d) induced pluripotent cells.
(a) adherens junctions
(b) desmosomes
(c) tight junctions
(d) gap junctions
(a) allow small, water-soluble molecules to pass from cell to cell.
(b) interact with the intermediate filaments inside the cell.
(c) are formed from claudins and occludins.
(d) are found in cells in connective tissues.
three-carbon molecules (dihydroxyacetone phosphate and glyceraldehyde 3-phosphate). Which
enzyme catalyzes this reaction?
(a) aldolase
(b) phosphoglucose isomerase
(c) enolase
(d) triose phosphate isomerase
pathways, which makes it a central hub in the regulation of cellular metabolism. Which of the
following molecules is not made from pyruvate?
(a) oxaloacetate
(b) ethanol
(c) lactate
(d) NADH
fashion.
A. True
B. False
attached to it. Which of the following proteins do you expect the RNA from the rough endoplasmic
reticulum to encode?
(a) soluble secreted proteins
(b) ER membrane proteins
(c) plasma membrane proteins
(d) all of the above
Your friend discovered a transmembrane glycoprotein, GP1, on a pathogenic yeast cell that is
recognized by human immune cells. He decides to purify large amounts of GP1 by expressing it in
bacteria. To his purified protein he then adds a branched 14 - sugar oligosaccharide to the asparagine
of the only Asn-X-Ser sequence found on GP1 (Figure Q15-48). Unfortunately, immune cells do not
seem to recognize this synthesized glycoprotein. Which of the following statements is a likely
explanation for this problem?
Figure Q15- 48
(a) The oligosaccharide should have been added to the serine instead of the asparagine.
(b) The oligosaccharide should have been added one sugar at a time.
(c) The oligosaccharide needs to be further modified before it is mature.
(d) The oligosaccharide needs a disulfide bond.
(a) The membrane of a secretory vesicle will fuse with the plasma membrane when it discharges
its contents to the cell’s exterior.
(b) Vesicles for regulated exocytosis will not bud off the trans Golgi network until the
appropriate signal has been received by the cell.
(c) The signal sequences of proteins destined for constitutive exocytosis ensure their packaging
into the correct vesicles.
(d) Proteins destined for constitutive exocytosis aggregate as a result of the acidic pH of the trans
Golgi network
that will fuse with the plasma membrane.
Figure Q15- 57
Given this diagram, which of the following statements is true?
(a) When this vesicle fuses with the plasma membrane, the entire Krt1 protein will be secreted
into the extracellular space.
(b) When this vesicle fuses with the plasma membrane, the C-terminus of Krt1 will be inserted
into the plasma membrane.
(c) When this vesicle fuses with the plasma membrane, the N-terminus of Krt1 will be in the
extracellular space.
(d) When this vesicle fuses with the plasma membrane, the N-terminus of Krt1 will be
cytoplasmic.
(a) specific binding to solutes.
(b) a gating mechanism.
(c) filtering solutes by charge.
(d) filtering solutes by size.
2
and H 2
O are generated during the oxidation of food molecules.
A. True
B. False
following descriptions best matches the function of a mutase?
(a) An enzyme that catalyzes the rearrangement of bonds within a single molecule.
(b) An enzyme that catalyzes a change in the position of a specific chemical group within a single
molecule.
(c) An enzyme that catalyzes the oxidation of a molecule by removing a hydride ion.
(d) An enzyme that catalyzes the addition of phosphate groups to other molecules.
following descriptions best matches the function of a kinase?
(a) An enzyme that catalyzes the rearrangement of bonds within a single molecule.
(b) An enzyme that catalyzes a change in the position of a specific chemical group within a single
molecule.
(c) An enzyme that catalyzes the oxidation of a molecule by removing a hydride ion.
(d) An enzyme that catalyzes the addition of phosphate groups to other molecules.
transport chain is important for powering the cell. Which of the names below is not one of those
commonly used to describe this reaction cycle?
(a) tricarboxylic acid cycle
(b) Krebs cycle
(c) oxaloacetic acid cycle
(d) citric acid cycle
to NADH is coupled to the generation of CO 2
and the formation of a high-energy thioester bond. The energy of the thioester bond is harnessed in
step 5. What is the energy used for?
(a) to generate a molecule of GTP
(b) to generate a molecule of ATP
(c) to generate a proton gradient
(d) to generate a molecule of NADH
(a) GPCRs are the largest family of cell-surface receptors in humans.
(b) GPCRs are used in endocrine, paracrine, and neuronal signaling.
(c) GPCRs are found in yeast, mice, and humans.
(d) The different classes of GPCR ligands (proteins, amino acid derivatives, or fatty acids) bind to
receptors with different numbers of transmembrane domains.
(a) actin filaments.
(b) intermediate filaments.
(c) microtubules.
(d) gap junctions.
receptor tyrosine kinase called RGFR. Which of the following types of alteration would be most
likely to prevent receptor dimerization?
(a) a mutation that increases the affinity of RGFR for RGF
(b) a mutation that prevents RGFR from binding to RGF
(c) changing the tyrosines that are normally phosphorylated on RGFR dimerization to alanines
(d) changing the tyrosines that are normally phosphorylated on RGFR dimerization to glutamic
acid
A. True
B. False
(a) are used to transfer proteins from one cell to another.
(b) mediate cell–cell attachments through homophilic interactions.
(c) are abundant in the plant cell wall.
(d) bind to collagen fibrils.