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Biotechnology: definitions and techniques, Appunti di Scienze e tecnologie applicate

Biotecnologie in inglese (CLIL)

Tipologia: Appunti

2020/2021

In vendita dal 27/06/2021

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Biotechnology
Use of living cells or organisms to produce materials useful to people.
-> using bacteria to make cheese and yogurt;
Using microbes to produce antibiotics and alcohol;
Using Yeast to produce beer and alcohol.
Pasteur can be seen as the father of biotechnology.
-> ancient origins:
Egypts mixed different types of plants
Traditional
-> use of organisms in order to produce chemicals.
Modern
-> obtained in laboratories.
Recombinant DNA
DNA molecules made in the laboratory using at least 2 different sources of DNA.
The first one was made in 1973 using plasmids from Escherichia Coli-> the cut plasmids
were mixed with ligase to form recombinant DNA. They were inserted into e. Coli, some are
resistant to both antibiotics.
DNA ligase
Restriction enzymes
-> used together to cut DNA into fragments and splice them together forming new
combinations.
Recombinant dna technology is very complex:
1. Identification of the gene
2. Cutting and isolation of the gene from the dna molecule
3. Cohesion of the gene with a dna vector
4. Transfer of the gene to a recipient cell.
Tools of biotechnology were discovered in the 70s-> restriction enzymes, gel
electrophoresis, PCR.
They are used in farmaceutica, agricultural field, medical field.
1. Restriction enzymes
Also called forbici intelligenti.
They recognise specific DNA sequences (restriction sites) of nucleotides to produce specific
cut.
At the end of the 60s was found that some bacteria defended themselves from virus
infections by producing specific enzymes (restriction enzymes) cutting the extraneous DNA
molecule and reducing them into smaller non infectious fragments.
-> Ecori: the first one discovered in Escherichia coli, it uses the enzymes to cut
bacteriophage DNA. When the viral dna is inside the bacterium, it idrolizza it through
restriction enzymes. The bacterium protects its dna with some specific molecules and kills
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Biotechnology Use of living cells or organisms to produce materials useful to people. ● -> using bacteria to make cheese and yogurt; ● Using microbes to produce antibiotics and alcohol; ● Using Yeast to produce beer and alcohol. Pasteur can be seen as the father of biotechnology. -> ancient origins: ● Egypts mixed different types of plants Traditional -> use of organisms in order to produce chemicals. Modern -> obtained in laboratories. Recombinant DNA DNA molecules made in the laboratory using at least 2 different sources of DNA. The first one was made in 1973 using plasmids from Escherichia Coli-> the cut plasmids were mixed with ligase to form recombinant DNA. They were inserted into e. Coli, some are resistant to both antibiotics. ● DNA ligase ● Restriction enzymes -> used together to cut DNA into fragments and splice them together forming new combinations. Recombinant dna technology is very complex:

  1. Identification of the gene
  2. Cutting and isolation of the gene from the dna molecule
  3. Cohesion of the gene with a dna vector
  4. Transfer of the gene to a recipient cell. Tools of biotechnology were discovered in the 70s-> restriction enzymes, gel electrophoresis, PCR. They are used in farmaceutica, agricultural field, medical field.
  5. Restriction enzymes Also called forbici intelligenti. They recognise specific DNA sequences (restriction sites) of nucleotides to produce specific cut. At the end of the 60s was found that some bacteria defended themselves from virus infections by producing specific enzymes (restriction enzymes) cutting the extraneous DNA molecule and reducing them into smaller non infectious fragments. -> Ecori: the first one discovered in Escherichia coli, it uses the enzymes to cut bacteriophage DNA. When the viral dna is inside the bacterium, it idrolizza it through restriction enzymes. The bacterium protects its dna with some specific molecules and kills

the viral dna through restriction enzymes, they break the dna backbone (phosphodiester bonds) between two subsequent nucleotides. Two ways in which they cut DNA: ● Straight cut form-> blunt ends: simplest dna end of a double stranded molecule; when the two helixes are interrupted in the center of restriction site. ● Staggered cut form-> sticky ends: join together (sticky ends can bind base pairings to other sticky ends); when the two helixes are cut asymmetrically resulting one longer than the other. -> fragments from different sources can be joined.

  1. Gel electrophoresis -> tool to separate restriction fragments and to identify where the cuts were made. We need: ● An electric field (dna is negatively charged because of the phosphate group) ● An agarose gel: semisolid gel extracted by algae. -> in this gel some wells are made (a mixture of fragments is contained in the wells). Then i apply the electric field through which dna fragments move from the negative pole towards the positive one. Fragments move according to their length (shortest move fast, longer slower). Gel electrophoresis gives 3 types of information: ● The number of fragments ● The size of fragments ● The relative abundance, indicated by the intensity of the bond. DNA fingerprinting-> uses restriction digestion and gel electrophoresis to identify individuals based on differences in their DNA sequences. -> it works best with highly polymorphic sequences (having multiple alleles that are likely to differ between individuals). Two types of polymorphism are used:
  2. Single nucleotide polymorphism-> inherited variations in a single base. If a SNP occurs in a restriction enzyme recognition site, and one variant is not recognized by the enzyme, then individuals can be distinguished.
  3. Short tandem repeats-> short repetitive sequences that are inherited. PCR is used to amplify fragments (different lengths, can be separated by gel electrophoresis) containing STRS. Genetic screening-> test to see if a person has a genetic disease, is predisposed, is a carrier. -> prenatal screening, screening of newborns, screening asymptomatic people who have relatives with genetic diseases. DNA testing-> direct analysis of dna for mutations-> the most accurate way to detecting abnormal alleles. Any cell of the body may be analysed: PCR amplification means that only few cells are needed. Feral cells may be screened before implantation (after implantation they can be analysed by chorionic villus) for diseases such as fibrosis.

● Colony stimulating factor: protein that stimulates the production of blood cells. ● Erythropoietin: hormone secreted by kidneys, important to produce blood cells in patients with kidneys dialysis. Vectors Recombinant dna must enter the host cell and duplicate simultaneously with the cell itself-> in order to duplicate itself: the new dna must attach to a replicon-> a dna or rna molecule that is replicated from a single origin. It can be integrated in two ways:

  1. The fragment can insert itself into a host chromosome near the site of origin of replication.
  2. The dna fragment can enter the host cell as an integrating part of a transported DNA sequence (vector). In order to be efficient, a vector must satisfy fundamental requirements, it should: ● Be able to duplicate independently of the host cell. ● Contain a sequence of dna which a restriction enzyme can cut and combine with new dna. ● Contain a reporter gene. ● Have smaller dimensions then those of the host chromosome. Plasmids ● Small and easy to manipulate. ● Have one or more restriction enzyme recognition sequences. ● Many have genes for antibiotic resistance that can be used as selectable markers. -> have a bacterial origin of replication and can replicate independently of host chromosome. Most eukaryotic genes are too large to be inserted into a plasmid. Viruses-> especially retroviruses: can infect different species of cells naturally; they transform rna into dna; they offer a great advantage over plasmids. -> used for both eukaryotic and prokaryotic cells. Only a small portion of host cells take up the vector-> they Don-t require any particular strategy to be induced to enter a host cell-> great advantage. -> the use of prokaryotic cells as hosts for eukaryotic genes-> can lead to biologically inactive proteins due to the differences in the pattern of gene expression between prokaryotes and eukaryotes. Yeasts artificial chromosomes-> are minimal chromosomes used to introduce genes into eukaryotes. Reporter genes-> genes whose expression is easily observed. There are several types: ● Antibiotic resistance in a plasmid or other vector. A transformed host cell will grow on medium containing the antibiotic. ● Green fluorescent protein (GFP)-> normally occurs in jellyfish. Emits visible light when exposed to uv light. Uses of biotechnology ● Medecine: Biotechnology is used in laboratories to produce important chemicals in order to cure people.

● Farming: introducing useful products inside animals and making them cure people. (Transgenes are inserted next to the promoter in lactoglobulin-milk protein-the transgenic animal then produces large quantities of proteins in its milk) -> human growth hormone for children suffering deficiencies, can now be produced by transgenic cows. Goal of biotechnology in agriculture ● Improving the environmental adaptations of plants ● Improving nutritional traits ● Improving crops after harvesting -> crop plants have been modified to produce their own insecticides. The bacterium bacillus thuringiensis produces a protein that kills insects. -> alternative to insecticides, toxin easily biodegradable. The gens for the toxin have been isolated and cloned, then inserted into plant cells using plasmid vectors. Some transgenic crops are resistant to herbicides. -> recombinant dna is also used to adapt a crop to an environment (plants that are salt tolerant). ● Some of the negative effects of agriculture such as water pollution could be reduced. Concerns over biotechnology ● Genetic manipulation is an unnatural interference in nature ● Genetically altered foods are unsafe to eat ● Genetically altered crop plants are dangers for the environment Golden rice-> transgenic yellow rice. Contains genes to synthesise b/carotene that-s converted to vitamin A in the body. -> GMOS: genetically modified organisms. Are generated by introducing a gene into an organism where it was not originally present or modifying existing genes. The new gene is often derived from another species and organisms belonging to different kingdoms / domains.-> in these cases: the recipient organism of these gene is called transgenic. ● Genetic modification ● Genetic manipulation ● Genetic engineering -> all refer to the use of modern biotechnology techniques to insert, eliminate or modify the genes of an organism. Carrot cloning 1958-> experiments showed that an entire carrot plant could be cloned from differentiated carrot root cells.-> this showed that the root cell contained a functional and entire genome. Dolly the sheep Thanks to stem cells I can clone organisms. 1997: dolly the sheep 1 mammal cloned. -> 3 sheep’s involved:

  1. One donated the uterus
  2. One donated the nucleus-> took an adult cell.
  3. One donates the cell without nucleus-> adult cells become stem cells The new birth (?) is the same that donates the nucleus.