Phylogenetic Trees: Understanding Evolutionary Relationships, Lecture notes of Biology of microorganisms

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2020/2021

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Phylogenetic tree is a hypothesis about the evolutionary relationships among organisms
based on available anatomical and/or molecular data.
- It helps to show which species are more related to the other
DNA sequences of 2 closely related taxa show fewer differences as mutation rates relatively
constant and recently diverging species have less time to accumulate differences.
Sister groups Groups that are more closely related to each other than either of them is to
any other group.
A monophyletic group consists of a common ancestor and all its descendants.
Monophyletic Describes groupings in which all members share a single common ancestor
not shared with any other species or group of species. Eg: tetrapods and amphibians
Paraphyletic Describes groupings that include some, but not all, the descendants of a
common ancestor.
group “reptiles” excludes birds, although they share a common ancestor with the included
animals
Polyphyletic Describes groupings that do not include the last common ancestor of all
members.
Many features of skeletal anatomy and DNA sequence strongly support the placement of
birds as a sister group to the crocodiles and alligators.
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Phylogenetic tree is a hypothesis about the evolutionary relationships among organisms based on available anatomical and/or molecular data.

  • It helps to show which species are more related to the other DNA sequences of 2 closely related taxa show fewer differences as mutation rates relatively constant and recently diverging species have less time to accumulate differences. Sister groups Groups that are more closely related to each other than either of them is to any other group. A monophyletic group consists of a common ancestor and all its descendants. Monophyletic Describes groupings in which all members share a single common ancestor not shared with any other species or group of species. Eg: tetrapods and amphibians Paraphyletic Describes groupings that include some, but not all, the descendants of a common ancestor. group “reptiles” excludes birds, although they share a common ancestor with the included animals Polyphyletic Describes groupings that do not include the last common ancestor of all members. Many features of skeletal anatomy and DNA sequence strongly support the placement of birds as a sister group to the crocodiles and alligators.

23.2 BUILDING A PHYLOGENETIC TREE

Homology is similarity by common descent. Characters = anatomical, physiological, or molecular features of organisms. character states = several observed conditions Eg: a character can be present or absent—lungs are present in tetrapods and lungfish, but absent in other vertebrate animals. Characters that are similar because of descent from a common ancestor are said to be homologous

parsimony Choosing the simplest hypothesis to account for a given set of observations.

  • In systematics, parsimony suggests counting character changes on a phylogenetic tree to find the simplest tree for the data (the one with the fewest number of changes).
  • Each change = mutation(s) in ancestral species, more changes or steps we propose, the more independent mutations we must also hypothesize.

Molecular data complement comparative morphology in reconstructing phylogenetic history. HIV nucleotide sequences evolve so rapidly that biologists can build phylogenetic trees that trace the spread of specific strains from one individual to the next.

Molecular fossils Sterols, bacterial lipids, and some pigment molecules, which are relatively resistant to decomposition, that accumulate in sedimentary rocks and document organisms that rarely form conventional fossils. Burgess rocks preserve a remarkable sampling of marine life during the initial diversification of animals Geological data indicate the age and environmental setting of fossils. radiometric dating Dating by using the decay of radioisotopes as a yardstick, including (for time intervals up to a few tens of thousands of years) the decay of radioactive 14 C to nitrogen and (for most of Earth history) the decay of radioactive uranium to lead. half-life The time it takes for an amount of a substance to reach half its original value. Radioactive half-life is the time it takes for half of the atoms in a given sample of a substance to decay carbon dating: c14 in the air is used by plants, which is eaten by animals and deposited into the school of the animal.

  • The half life of c14 is 5730 years, if there are 5 c14 atoms in skull, inferable to say it was formed about 5730 yrs ago.
  • The decay of c14 is changed to nitrogen atoms.