Guide to clinical biochemistry, Lecture notes of Medical Biochemistry

guide to clinical biochemistry and immunology

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Clinical Biochemistry Clinical Biochemistry (including Immunology) user guide
Document Number: BIO NO 038
Author: Dr S. Stock
Approved by: Dr H Holt
Page 1 of 72
Date of last review: July 2021
Revision: 20.0
WARNING: This is a controlled document
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CLINICAL BIOCHEMISTRY
(INCLUDING IMMUNOLOGY)
USER GUIDE
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Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 1 of 72 Date of last review: July 2021 Revision: 20.

CLINICAL BIOCHEMISTRY

(INCLUDING IMMUNOLOGY)

USER GUIDE

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 2 of 72 Date of last review: July 2021 Revision: 20.

Dear Colleague,

Efficient and appropriate use of the laboratory service is central to the modern practice of medicine. The aim of this user guide is to provide clear guidance on how and when to use our service, which analyses are available and which sample type should be used. Clinical Biochemistry has laboratories on the three acute Trust sites in East Kent and provides a continuous service to hospitals and local general practitioners. Our specialist immunology service is located at the William Harvey Hospital, Ashford. Clinical Biochemistry (including immunology) is accredited by UKAS to ISO 15189 (laboratory reference 8636). We process more than 9 million individual biochemistry and immunology tests each year. Analyses are performed using the latest technology by qualified, HCPC registered scientific staff assisted by trained support staff. All processes are rigorously quality controlled and the laboratory participates in external quality assessment programmes and accreditation schemes. Authorised personnel periodically review the examinations provided by the laboratory to ensure that they are clinically appropriate for the requests received. Clearly, a concise user guide cannot give comprehensive coverage of all aspects of the service we offer. Contact names and telephone numbers of key senior members of staff are given - please contact us whenever you have a query over which investigation is most appropriate, what collection conditions might affect your result and how you should interpret that result. Clinical advice is always available from HCPC registered clinical scientists and is an essential part of the service we offer: effective liaison with us improves our service to you. We have made every effort to ensure that the information in this user guide is correct at the time of publication. However, information will obviously change as new technologies become available and the service evolves to meet the needs of our users. We welcome any comments or suggestions you would like to make, positive or negative, so that these can be incorporated into future editions. Dr Sally Stock PhD FRCPath Consultant Clinical Scientist & Head of Service for Clinical Biochemistry and Immunology

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 4 of 72 Date of last review: July 2021 Revision: 20.

  1. INTRODUCTION This user guide is designed to help you get the most from the clinical biochemistry and immunology services at East Kent Hospitals. SERVICE OVERVIEW The clinical biochemistry and immunology laboratory service, which operates within East Kent Hospitals University NHS Foundation Trust (EKHUFT), covers 5 hospital sites including:
  2. William Harvey Hospital (WHH), Ashford – hub blood sciences laboratory, which processes all work from primary care, and provides many specialist tests. Immunology laboratory is located at this site.
  3. Kent & Canterbury Hospital (K&CH), Canterbury – cross trained spoke laboratory, provision of some specialist testing
  4. Queen Elizabeth the Queen Mother Hospital (QEQMH), Margate – cross trained spoke laboratory
  5. Royal Victoria Hospital Folkestone – phlebotomy service only
  6. Buckland Hospital, Dover – phlebotomy service only There is a 24-7 / 365 diagnostic laboratory service offered on sites 1-3 with full clinical biochemistry cover during these times provided by clinical scientists, biomedical scientists and assistant health care scientists. The immunology laboratory at WHH is open Monday – Friday 08:00 - 17:15. All of our clinical biochemistry (including immunology) laboratories are UKAS ISO 15189; 2012 accredited. Tests listed on our current scope of practice can be found on the UKAS website https://www.ukas.com/ or http://www.ekhuft.nhs.uk/pathology/. Section 22 of this user guide lists our test repertoire, both tests provided within EKHUFT and those that are referred to other laboratories. The section details reference ranges, sample requirements, turnaround time, referral laboratory (if applicable) and identifies those test that are not UKAS ISO 15189; 2012 accredited. GEOGRAPHICAL CATCHMENT East Kent University Hospitals NHS Foundation Trusts clinical biochemistry and immunology laboratories are spread across a wide geographical area supporting over 110 primary care sites from Margate to the east, Faversham to the north, Tenterden to the west and Romney Marsh to the south. Our services are reliant upon a specific and robust transport infrastructure in order to effectively support an ever growing population of circa 760,000 within East Kent. These support services are located within equal distance of each other geographically but are constrained by the road network in places. Our services operate from:

1. The William Harvey Hospital, Ashford

2. The Kent & Canterbury Hospital, Canterbury

3. The Queen Elizabeth the Queen Mother Hospital, Margate

4. Royal Victoria Hospital, Folkestone (Phlebotomy Only)

5. Buckland Hospital, Dover (Phlebotomy Only)

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 5 of 72 Date of last review: July 2021

Revision: 20.

The figure below demonstrates the wide geographical spread of East Kent’s Pathology services as things stand. FIGURE 1 – SPREAD OF MAIN NHS TRUST SITES CLINICAL BIOCHEMISTRY (INCLUDING IMMUNOLOGY) LABORATORY LOCATIONS WHH laboratory is located on the ground floor in the green zone at the rear of the hospital. Note that phlebotomy facilities at WHH are located near the main entrance, not in Pathology. K&CH laboratory is located in the corridor between Outpatients and Clarke Ward. Phlebotomy services are adjacent to the laboratory. QEQMH laboratory is located in the St Peter’s Road wing on the ground floor. Phlebotomy services are adjacent to the laboratory.

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 7 of 72 Date of last review: July 2021 Revision: 20. Royal Victoria Hospital, Folkestone AREA DAYS TIMES Outpatients Monday – Friday 08.30-16. Outpatients Saturdays 09.00-12. All patients are seen via an appointment system, appointments are booked via the patient portal on the EKHUFT website. Buckland Hospital, Dover AREA DAYS TIMES Outpatients Monday – Friday 08.00-15. All patients seen via an appointment system. Appointments are booked via the patient portal on the EKHUFT website. Appointments required for Glucose Tolerance Tests (GTT) only. Booking number 01304 222552

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 8 of 72 Date of last review: July 2021 Revision: 20.

  1. CONTACT NUMBERS AND KEY PERSONNEL The main hospital switchboard number is: 01227 766877 If calling from outside the hospital, dial the main switchboard number and then once prompted add the appropriate extension number as below. If calling from within the hospital then dial the extension number directly. Alternatively, use the automated answering system on 01233 616060 and select the appropriate option when prompted The following prefixes apply: WHH (723) K&CH (722) QEQMH (725) Contact Position Extension Number Clinical biochemistry laboratory WHH Main Laboratory Results (please try computer terminals first)

K&CH Main Laboratory Results (please try computer terminals first)

QEQMH Main Laboratory Results (please try computer terminals first)

Duty Biochemist (clinical enquires) ekhuft.biochemistryekhuft@ nhs.net

01233 616287 (direct line) Immunology laboratory WHH Main Laboratory 723 6716 Senior personnel Dr Sally Stock Consultant Clinical Scientist and Head of Service

01233 616025 (direct) Dr Edmund Lamb Consultant Clinical Scientist and Clinical Director of Pathology

Dr Joanna Sheldon Visiting Consultant Clinical Scientist (Immunology)

Miss Elizabeth Hall Principal Clinical Scientist 722 2868 Dr Helen Holt Principal Clinical Scientist and Quality Lead

Dr Danni Fan Principal Clinical Scientist 723 6165

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 10 of 72 Date of last review: July 2021 Revision: 20.

  1. SPECIMEN AND REQUEST FORM LABELLING  Requests made in primary care must be made via DartOCM  Requests made in secondary care must be made via Sunrise.

How to apply sunrise/Dart printed labels to specimen containers

As with all phlebotomy/sample collection processes it is essential that correct positive patient ID is performed and that all samples are labelled with the correct patient information. When placing printed sample labels on the containers, it is essential they are placed in the correct position and orientation and on the correct sample for the tests required. If the labels are not applied correctly, the analysers are not able to read the barcodes. This may cause delay in issuing results.

Example of a correctly labelled sample

 Note how the label is perfectly centred and straight, clearly printed and aligned on the tube with the coloured lid on the left. 

Examples of incorrectly labelled samples

 This label has been wrapped around the tube sideways. The analysers are unable to see/read the entire barcode.  Try to ensure the label is placed on the tube as straight as possible. Crooked, crumpled or torn labels will need reprinting.

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 11 of 72 Date of last review: July 2021 Revision: 20.  All Sunrise labels have the correct container information printed on them which relates to the tests requested/collected. The above tests were routine blood chemistry tests that should have been put in a yellow (gold) topped tube.  All Sunrise labels have the correct container information printed on them which relates to the tests requested/collected. The above tests were CSF tests that should have been put into a plain bottle and not grey topped.  All labels will fit onto adult blood tubes so there is no need to let them wrap over the bottom of the sample container.  This is an example of why we are asking for request forms for paediatric samples – our labels are too large for paediatric sample containers. If you require more than 1 tube for tests then either Sunrise will print the correct number of labels or you should reprint labels but please ensure that you reprint the correct NOTE: THE BARCODE MUST BE CLEAR AND IN SHARP DEFINITION. IF THE LABEL IS SMUDGED, PLEASE CLEAN THE PRINTER WITH AN ALCOHOL WIPE AND REPRINT THE LABEL.

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 13 of 72 Date of last review: July 2021 Revision: 20.

  1. SAMPLE REQUIREMENTS Please
  • ask about tests; how to arrange them and how to interpret them.
  • be prepared to bring urgent specimens to the laboratory.
  • ensure that specimens and request forms are correctly labelled and completed as described in this user guide: specimens must be sent in the appropriate sealed container with the correct request form attached (if appropriate). Please avoid
  • sending leaking specimens
  • sending unlabelled samples
  • asking for tests to be performed urgently/results telephoned unless there is a clear clinical need BLOOD SAMPLES Several types of evacuated tubes for blood collection are in use for adults. The following list is not exhaustive: for certain specialist tests there are particular collection conditions which must be strictly adhered to. Please contact the laboratory for further information if you have any doubt about which tube should be used or whether special collection conditions apply.
  • Plain clotted (red) for therapeutic drug analyses.
  • Gel separator tube (gold) for majority of biochemistry and immunology tests.
  • Lithium heparin (green) for ammonia (adult samples) and for certain specialist assays.
  • EDTA (lavender/purple) for HbA1c, PTH, troponin, NT-proBNP, ammonia, tacrolimus and ciclosporin.
  • Fluoride oxalate (grey) for glucose, lactate and alcohol.
  • Cryoglobulin collection flask and tubes available from the laboratory by arrangement. Note: tubes are labelled with a line indicating the amount of blood which should be placed in them. Please attempt to put the correct amount of blood in the tubes and ensure that any anticoagulants or preservatives are mixed into the blood by gentle inversion of the tubes once they have been filled. For paediatric use, a supply of smaller containers with the same colour coding as adult tubes is available. However, other types of paediatric tubes are also in circulation. Please ensure the correct lids are re-fitted to these tubes after collection. Order of filling of evacuated tubes 1 - Citrate tubes (for clotting studies/INR) 2 - Dry tubes with clot activator for tests on serum (red) 3 - Gel separator tubes with clot activator for tests on serum (gold/yellow) 4 - Lithium heparin tubes (green) 5 - EDTA tubes (lavender) 6 - Fluoride oxalate tubes (grey) It is essential that the above sequence is adhered to otherwise cross contamination may occur leading to erroneous results.

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 14 of 72 Date of last review: July 2021 Revision: 20.

URINE SAMPLES

Random urines should be collected into a 60 mL white-top (or silver-top) universal container. Do not use the red-top (Boricon) microbiology pots. Patient information leaflets describing the collection procedure are available (see section 21) 24 h urine containers are issued by the laboratory. The Pathology reception staff are responsible for ensuring that the correct container and collection details are issued, either directly to the patient or to the ward or clinic staff. Urine containers for trace metal (e.g. copper) analysis are acid-washed. Patient information leaflets describing the collection procedure are available (see section 21). CSF SAMPLES A plain universal or 2 mL sterile tube must be used for total protein or oligoclonal bands and a fluoride oxalate sample for glucose. When investigating suspected meningitis, the CSF glucose request must be accompanied by a plasma glucose request/sample. When investigating suspected multiple sclerosis, the request for CSF oligoclonal bands must be accompanied by a clotted (red or gel separator tube) blood sample. CSF specimens contaminated with blood will not be analysed. For xanthochromia testing see section 21. FAECAL SAMPLES Faecal specimens for measurement of porphyrins, calprotectin and elastase must be collected into sterile faeces pots. Specimens for porphyrins MUST be protected from light. Patient information leaflets describing the collection procedure are available (see section 21). STORING SAMPLES The storage of whole blood specimens in a refrigerator at 4oC prior to sending to the laboratory is not suitable for the vast majority of analytes. Notably serum potassium, phosphate and magnesium will be falsely elevated due to leakage from the red blood cells and the bicarbonate may be falsely decreased. Do not store specimens in the freezer! Do not stand specimens on radiators or other very hot places! If in doubt, contact the laboratory. Some samples must be brought to the laboratory immediately (e.g. ammonia, lactate, ACTH, gut hormones, renin, aldosterone, and plasma metanephrines). Samples for these tests cannot be collected in primary care (see section 10). Please contact the duty biochemist if you wish to discuss sample requirements, or make the laboratory aware that an unstable sample is being sent. If samples are not delivered to the laboratory within 4 hours after collection, they must be centrifuged (2000 g for 10 minutes) at source (within 8 hours of collection) and stored at 2 – 8 degrees before transportation, to preserve sample integrity and to ensure that they are not rejected upon arrival at EKHUFT. The laboratory must be informed that this procedure is in place, and it must be agreed in writing. UNSUITABLE SAMPLES Under certain circumstances results of some tests will not be reported due to the receipt of a compromised sample (e.g. many analytes will not be reported on haemolysed or lipaemic samples). This is done to ensure that the results you receive are clinically meaningful and accurate: please do not ask laboratory staff to release results in these situations.

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 16 of 72 Date of last review: July 2021 Revision: 20.

  1. URGENT AND OUT OF HOURS REQUESTS  Please request tests to be performed urgently only when it is clinically essential.  All of our work is processed rapidly and the results are available in a timely manner. The agreed non- urgent turnaround times for each test are published within this user guide (see section 22).  Urgent requests from primary care should be clearly marked "URGENT", placed in the designated large, zip-topped plastic envelopes & then either placed in the blue transport boxes or given to the driver to be placed in the yellow transport box that is in the van. These samples will be given priority on arrival in the laboratory. Outside of the core laboratory hours and on public holidays an urgent clinical biochemistry service operates. The following repertoire of tests (blood tests unless stated otherwise) is available: however, tests should only be requested when there is an urgent clinical need and the result is going to make an immediate difference to the management/treatment of the patient. Other tests may be available following approval. Clinical advice is always available by contacting the on call clinical biochemist via switchboard. Results are generally available via computer terminals on all wards. Laboratory staff should not be routinely telephoned for results. General biochemistry Suspected toxicity Albumin Valproate Alkaline phosphatase Theophylline Ammonia Salicylate Amylase Phenytoin AST Paracetamol ( > 4 hours post overdose ALT Lithium Bilirubin Iron Carboxyhaemoglobin (use ward based blood gas instruments) Ethanol Chloride Digoxin CRP Carbamazepine (following requesting consultant and duty biochemist discussion) Creatine kinase (CK) Creatinine Glucose (^) Urine HCG (according to protocol) Sodium Lactate Potassium Magnesium Osmolality Osmolality Phosphate CSF Potassium Glucose Sodium Total protein Total protein Troponin Urate (pre-eclampsia) Urea

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 17 of 72 Date of last review: July 2021 Revision: 20.

  1. TESTS THAT CANNOT BE COLLECTED AT THE GP SURGERY There are certain tests that are unsuitable for collection outside the hospital setting. Often these are tests requested by a secondary care physician. There are several reasons for this including:  the sample is unstable and must reach the laboratory quickly  there are funding restrictions around the use of the test  testing will only be carried out following prior discussion with the laboratory Samples that cannot be tested will be rejected which frustrates doctors and any repeat testing worries patients. Please share the table below with your practice phlebotomists so that we can reduce unnecessary repeat testing and worry. Tests Reason for unavailability Blood adrenocorticotrophic hormone (ACTH), aldosterone, ammonia, biotinidase, calcitonin, chromogranin A and B, cold agglutinins, C- peptide, cryoglobulins, free fatty acids, gastrin, glucagon, gut hormone profile, insulin, pancreatic polypeptide, plasma metanephrines, renin, somatostatin, vasoactive intestinal polypeptide (VIP), white cell enzymes Analyte unstable Must be taken at K&CH, QEQMH or WHH Urine bilirubin, urobilinogen, glucose, ketones Analyte unstable Test using reagent strip analysis on a fresh urine sample at the surgery Anti-mullerian hormone (AMH) Test not funded for primary care Citrullinated cyclic peptide (CCP) antibodies Test not funded for primary care Chromium, cobalt, manganese Risk of sample contamination Must be taken at K&CH, QEQMH or WHH Clozapine Sample must be sent directly to Clozaril Monitoring Service May be taken and posted from GP surgery Carnitine and acyl carnitine profile May be taken on children’s wards Troponin Patients with chest pain should attend A&E or Emergency Care Centre Other requests MUST be arranged with the Duty Biochemist 01233 616060 and relevant clinical details included with the request
  2. HIGH RISK SAMPLES The laboratory operates a policy of universal safety precautions for all samples and we recommend that you regard all blood as being potentially infectious. High risk labelling of samples is not required.
  3. INFORMED CONSENT When a patient presents to a GP surgery or clinic and submits to a collecting procedure, consent is inferred. The EKHUFT policy; Patient Information and Consent to Examination or Treatment is available via the staff zone of the intranet, and for patients there is a web link to the DH web site regarding medical consent.

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 19 of 72 Date of last review: July 2021 Revision: 20.

  1. COMMUNICATION OF CRITICAL AND UNEXPECTED RESULTS It is our policy to telephone apparently unexpected critical results which may immediately affect patient management following the limits in the table below. The BMS or Clinical Scientist can telephone any abnormal result at their discretion e.g. this may be considered if there has been a significant change from previous results. Please note it may not be possible to communicate critical results on GUM patients out of hours if the only patient identifier is the GUM reference. Such results must be communicated at the first available opportunity. We are required to log telephoned results. Therefore, you will be asked to confirm the patients name, date of birth and hospital number and to give your name and grade. You will also be asked to read back the results transmitted to you to ensure they have been transcribed correctly. All telephoned results should be written in the ward results diary (or telephone result pads) or in the patient’s notes; not on a loose scrap of paper. Telephoned results must be relayed as a matter of priority to the clinician responsible for the patients care. For A&E (Emergency Department, ED) there is generally no need to telephone certain critical results (those highlighted blue in the tables below): critical results will be displayed on the PTL/whiteboards within A&E as soon as they are released from the laboratory, and will flash to highlight them to A&E staff. However should the PTL become unavailable (e.g. due to a service interruption) or a software fault within the laboratory’s IT systems prevents transmission of results, then it will be necessary to telephone critical results to A&E as per other clinical areas. The A&E staff will inform the laboratory should a PTL failure occur. Lower phoning limit (phone if less than or equal to) Analyte Upper phoning limit (phone if greater than or equal to) n/a (^) AKI * AKI- n/a AKI * AKI-2 (GP B see note) * n/a (^) ALT (U/L) 900 (unexpected inpatient/GP/out-patients) n/a Amikacin (mg/L) 5. n/a Ammonia (mol/L) 100 (paediatric <16 y only) n/a Amylase (U/L) 625 (GP/out-patients only) n/a (^) AST (U/L) 750 (unexpected inpatient/GP/out-patients) 10 Bicarbonate (mmol/L) n/a n/a (^) Bile acids (umol/L) 40 n/a Bilirubin, total (μmol/L) 300 (paediatric <16 y only) n/a (^) Bilirubin, conjugated (μmol/L) 25 (paediatric only) 1.8 (GP B see note) Calcium (adjusted) (mmol/L)

n/a (^) Carbamazepine (mg/L) 25 (^50) Ciclosporin (g/L)** 250 n/a CK (U/L) 5000 50 (unless post-dex.) 200 (if post-synacthen) Cortisol (nmol/L) n/a n/a Creatinine (umol/L) 350 (200 if less than 16 years old and adults with no previous result or no result in the previous year) n/a (^) CRP 200 (GP only) n/a Digoxin (g/L) 2.5 (GP B see note) n/a Ethanol (mg/L) 4000 n/a (^) Gentamicin (mg/L) 2.

Document Number: BIO NO 038 Author: Dr S. Stock Approved by: Dr H Holt Page 20 of 72 Date of last review: July 2021 Revision: 20. 2.0 (^) Glucose (CSF) (mmol/L) n/a 2.5 Glucose (mmol/L) 15.0 (in children <16 y) 25.0 (adult not known to be DM) 30.0 (adult known to be DM) n/a Lithium (mmol/L) 1.5 (GP B see note) 0.40 (^) Magnesium (mmol/L) 4. 260 (unexplained) Osmolality (serum)(mOsm/Kg H 2 O) 305 (unexplained) n/a (^) Paracetamol (mg/L) 30 n/a Phenobarbital (mg/L) 70 (adults), 40 (paediatrics) n/a Phenytoin (mg/L) 25 (GP B see note) 0.30 Phosphate (mmol/L) n/a 2.5 Potassium (mmol/L) 6.0 (only if AKI) 6.5 (all except neonates and pre-dialysis) 7.0 (all) n/a Salicylate (mg/L) 300 (^2) Sirolimus (g/L)** 10 130 (paediatric only) 120 (unexpected inpatient results/all out-patients & GP's) Sodium (mmol/L) 150 (unexpected^ inpatient^ results/all^ out- patients & GP's) n/a Sweat chloride All positive tests (^3) Tacrolimus (FK506) (g/L)**

n/a Theophylline (mg/L) 25 (GP B see note) n/a Thyroid stimulating hormone 100 (GP only) 50 (when unexpected, GP only) n/a Thyroxine (T4, free) 50 (when unexpected, GP only) n/a Tobramycin (mg/mL) 2. n/a Triglycerides 20.0 (when unexpected, GP only) n/a Vancomycin (mg/L) 25.0 (pre dose) 80 .0 (post dose) n/a (^) MPO, PR3, GBM antibodies New positives n/a Paraproteins New cases at discretion of clinical scientist *It is not necessary to telephone AKI scores for patients on dialysis. AKI (or other) critical alerts relating to radiology patients awaiting or following contrast injection for CT must be telephoned to the duty radiologist (via the X-ray viewing extension 722-2829 between 08:00 and 17:00 Monday to Friday, or via switchboard between 17:00 and 20:00 Monday to Friday and between 08:00 to 20:00 at weekends and on public holidays). Outside of these hours such results must be telephoned to the on call medical registrar. **Telephone all critical immunosuppressant results to the renal transplant office (extn. 722-6443) in addition to the requesting location if not a renal ward/renal unit. Note GP B: if primary care and out of surgery hours then telephone the GP the next day unless the next day is a Saturday, Sunday or Public Holiday in which case telephone the out of hours service Note: tests in cells with blue shading do not need to be telephoned to A&E (Emergency Department, ED), unless the laboratory has been informed that the PTL is out of operation.