Metabolism - Human Physiology - Lecture Notes, Study notes of Human Physiology

Metabolism, Energy and Enzymes, Chemical Reactions in Body, Types of Metabolic Reactions, Hydrolysis and Dehydration, Energy Metabolism, Functional Properties of Enzymes, Saturation Kinetics are some points from this lecture. This is Human Physiology lecture handout. Few important keywords from this lecture note are given above.

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2011/2012

Uploaded on 12/23/2012

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Metabolism, Energy and Enzymes
A. Metabolism
=> total of all chemical reactions in the body
catabolic reactions - break down large molecules into smaller ones
anabolic reactions - build larger molecules from smaller ones (synthesis)
exergonic reactions release energy
endergonic reactions require energy
Major types of metabolic reactions:
1. Hydrolysis and Dehydration (Condensation)
hydrolysis - add H2O to break bonds between monomer units, catabolic
A–B + H2O → A–OH + H–B
e.g., sucrose + H2O → glucose + fructose
dehydration (condensation) - remove H2O to join monomers, anabolic
A–OH + H–B → A–B + H2O
e.g., a.a.1 + a.a.2 → a.a.1a.a.2 + H2O
2. Phosphorylation and Dephosphorylation
phosphorylation - add phosphate group (Pi)
C + Pi → C–P + H2O
e.g., ATP synthesis: ADP + Pi + energy → ATP + H2O
dephosphorylation - remove phosphate group
C–P + H2O → C + Pi
e.g., ATP hydrolysis: ATP + H2O → ADP + Pi + energy
Phosphate transfer from ATP: C + ATP → C–P + ADP
3. Oxidation-Reduction (Redox) Reactions
=> electron transfer reactions: Oxidation Is Loss, Reduction Is Gain
- redox rxns. are coupled: one molecule is oxidized, another is reduced
- redox rxns. in cells often involves transfer of H atoms (not H+ ions)
e.g., reduction of pyruvate to lactate: C=O + 2 H → H-C-OH
- coenzymes act as temporary carriers of H atoms and their electrons
NAD+ + 2 H → NADH + H+ FAD + 2 H → FADH2
oxidized reduced oxidized reduced
- oxygen is the ultimate electron acceptor in cellular respiration: ½ O2 + 2 H → H2O
B. Energy Metabolism
- cells use chemical energy to do biological work: movement
synthesis
transport
- energy released from high-energy molecules broken down to lower-energy molecules
higher energy bonds: C-H, C-C lower energy bonds: C-O, O-H
e.g., oxidation of glucose C6H12O6 + 6 O2 → 6 CO2 + 6 H2O + energy
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Metabolism, Energy and Enzymes

A. Metabolism => total of all chemical reactions in the body catabolic reactions - break down large molecules into smaller ones anabolic reactions - build larger molecules from smaller ones (synthesis) exergonic reactions release energy endergonic reactions require energy

Major types of metabolic reactions:

  1. Hydrolysis and Dehydration (Condensation) hydrolysis - add H 2 O to break bonds between monomer units, catabolic A–B + H 2 O → A–OH + H–B e.g., sucrose + H 2 O → glucose + fructose dehydration ( condensation ) - remove H 2 O to join monomers, anabolic A–OH + H–B → A–B + H 2 O

e.g., a.a. 1 + a.a. 2 → a.a. 1 a.a. 2 + H 2 O

  1. Phosphorylation and Dephosphorylation phosphorylation - add phosphate group (Pi) C + Pi → C–P + H 2 O e.g., ATP synthesis: ADP + Pi + energy → ATP + H2O dephosphorylation - remove phosphate group C–P + H 2 O → C + Pi e.g., ATP hydrolysis: ATP + H2O → ADP + Pi + energy Phosphate transfer from ATP: C + ATP → C–P + ADP
  2. Oxidation-Reduction (Redox) Reactions => electron transfer reactions: O xidation I s L oss, R eduction I s G ain - redox rxns. are coupled : one molecule is oxidized, another is reduced - redox rxns. in cells often involves transfer of H atoms (not H+^ ions) e.g., reduction of pyruvate to lactate: C=O + 2 H → H-C-OH - coenzymes act as temporary carriers of H atoms and their electrons NAD+^ + 2 H → NADH + H+^ FAD + 2 H → FADH 2 oxidized reduced oxidized reduced - oxygen is the ultimate electron acceptor in cellular respiration: ½ O 2 + 2 H → H 2 O

B. Energy Metabolism

  • cells use chemical energy to do biological work: movement synthesis transport
  • energy released from high-energy molecules broken down to lower-energy molecules higher energy bonds: C-H , C-C lower energy bonds: C-O , O-H e.g., oxidation of glucose C 6 H 12 O 6 + 6 O 2 → 6 CO 2 + 6 H 2 O + energy

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[Substrate]

  • ATP is the “energy currency” of cells energy captured from oxidation of glucose is used to make ATP (ADP + Pi → ATP) energy released from ATP hydrolysis powers energy-requiring processes

C. Enzymes => biochemical catalysts - speed up chemical reactions

  • most enzymes are proteins
  • enzymes increase rates of reactions by lowering activation energy or by providing an alternative chemical pathway for the reaction Functional properties of enzymes:
  1. Substrate specificity - substrate (reactant) binds reversibly to active site of the enzyme
    • specific fit between substrate and active site (”lock and key”)
  2. Sensitivity to temperature and pH
    • due to effects on tertiary structure of proteins
  3. Saturation kinetics
    • reaction rate increases non-linearly to a maximum level
    • maximum rate is limited by the number of available enzymes
  4. Regulation a. allosteric regulation - regulation by binding of a modulator to a regulatory site on enzyme - can be either allosteric activation or allosteric inhibition b. covalent regulation - activation via phosphorylation of enzyme, catalyzed by a protein kinase c. feedback inhibition - product in a reaction sequence binds to enzyme to inhibit earlier step (via allosteric inhibition); regulates formation of products Examples of enzymes: catalase 2 H 2 O 2 → 2 H 2 O + O 2 carbonic anhydrase H 2 O + CO 2  H 2 CO 3  H+ + HCO 3 - hexokinase glucose + ATP → glucose-6-phosphate + ADP

Clinical applications:

  1. abnormal enzyme levels may be associated with disease (e.g., liver enzyme tests)
  2. genetic deficiency in an enzyme → inborn errors of metabolism (e.g., PKU)

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