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Microbiology Lab Notebook, Exams of Biology

South University - SavannahBiology

A series of questions and answers related to microbiology lab procedures and techniques. It covers topics such as autoclaving, incubation, staining, media selection, and antibiotic sensitivity testing. detailed instructions on how to perform each procedure and explains the purpose and significance of each step. It also includes questions that test the reader's understanding of the material and provide opportunities for self-assessment.

Typology: Exams

2021/2022

Available from 08/03/2022

Biodexpert
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1. What three elements are used in an autoclave to sterilize equipment?
heat, pressure, and steam
2. What is the minimum temperature an autoclave must be set at to achieve sterile condition?
125°C
3. If you are working in a lab in which an autoclave is not available, and you are pressed for time, which
would you chose to best sterilize your equipment? Hot steam or hot air? Explain why you chose your
answer.
Hot steam is the best choice as you can achieve a sterile environment in a matter of minutes whereas hot air will
take several hours to achieve the same effect.
4. What type of incubator is pictured below?
Lecture Exams
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  1. What three elements are used in an autoclave to sterilize equipment? heat, pressure, and steam
  2. What is the minimum temperature an autoclave must be set at to achieve sterile condition? 125°C
  3. If you are working in a lab in which an autoclave is not available, and you are pressed for time, which would you chose to best sterilize your equipment? Hot steam or hot air? Explain why you chose your answer. Hot steam is the best choice as you can achieve a sterile environment in a matter of minutes whereas hot air will take several hours to achieve the same effect.
  4. What type of incubator is pictured below?

Lecture Exams

Answer the following questions.

  1. At what temperature is the fixed incubator set to, as presented in the lab video? 37°C
  2. At what temperature should you refrigerate bacterial samples? Explain why this is beneficial. 4°C. This temperature slows bacterial growth and prolongs the life of the sample.
  3. What are the FOUR types of gloves presented in the lab video? Latex, Nitrile, Thermal cold, Thermal heat
  4. What THREE rules were discussed in regards to lab safety that would protect you and others from contamination? **1. Never eat or drink in the lab
  5. Always wear appropriate PPE
  6. Never leave the lab wearing PPE**
  7. What are the main sections that should be found in a lab notebook? Name at least 4. Objective, Procedure, Notes, Results and Deviations Answer the following questions.
  8. You are a lab instructor and Paul Smith has turned in his lab notebook for you to grade the lab experiment #2 on microscopy. Based upon what was covered in the lab video, how should Paul have entitled his lab experiment? PS02 Microscopy
  9. You arrive to your first day of work at a new lab. You are taking over for someone who took a new job at another lab. Your boss informs you that because of time restraints, this person did not exactly follow the experimental protocol. In order to proceed, you must know what he did differently. (1) According to the lab lecture, under what section of his notebook would you look to find the experimental steps? (2) As changes to the experimental steps were made, what are these differences called and how should it appear in the lab notebook?

Answer the following questions

  1. You are about to study a bacterial sample under a light microscope. You look into the oculars and see two circles. What adjustments need to be made? Compress or expand the oculars until a single circle can be seen while using both eyes simultaneously.
  2. What 2 parts of the microscope contributes to the total magnification to your sample? Objective and oculars (eyepiece)
  3. As you looking through the microscope you wish to dim (or limit) the amount of light entering into the eyepiece—what component of the microscope other than the light source itself can be adjusted to make these modifications? Diaphragm Answer the following questions
  4. What objective power is best suited if you are uncertain what the sample is and where to begin? 4x (or lowest power objective)
  5. You are viewing a sample of bacteria that is 3 mm in diameter through a 40x objective lens. The eyepiece has a magnification power of 10x. What size will the sample appear through the eyepiece? 1200 mm in diameter (or 400x’s larger)
  6. Based on the microscope shown in the lab lecture, which objectives would NOT require placing oil on the slide? 4x, 10x and 40x Answer the following questions.
  7. List the 4 main steps used to prepare a WET mount and indicate which (if any) step is optional. 1 – Clean slide 2 – Circle area on slide with wax/hydrophobic pen 3 – Apply organism to slide

*4 – View under microscope Note: there are no optional steps in the wet mount.

  1. When preparing a glass slide for a dry mount, what cleaning solution was used? 70% ethanol
  2. You wish to study the motility of a particular bacterium. What type of mounting technique would you use? Explain your answer. A wet mount technique is the best technique to use when studying motility of an organism because the sample remains viable (heat fixing kills the sample).
  3. What dye do Gram-negative bacteria primarily retain? Safranin Answer the following questions.
  4. Why do Gram-negative bacteria stain red? Gram-negative bacteria have a thin peptidoglycan layer in their cell wall. During the alcohol rinse step, the cell wall cannot retain the crystal violet dye. It will be washed away. The cell wall will then absorb the counter stain, safranin.
  5. Identify the stain and shape of the bacteria pictured below. Gram-positive; Cocci (spherical)

TSAYE (Tryptic soy agar yeast extract)

  1. Identify the selective and differential media known for its metallic sheen shown below. EMB (Eosin Methylene Blue) Answer the following questions.
  2. What type of bacteria does Sorbitol MacConkey agar select for? Gram-negative bacteria
  3. Eosin Methylene Blue (EMB) agar is: A. Selective media B. Differential media C. Selective and differential media D. None of the above C
  4. What pathogen is best identified using a SMAC agar? E coli O157:H7. SMAC agar specifically differentiates between non-pathogenic E coli and the pathogenic E coli strain O157:H7.
  5. What plating method is used to isolate a single bacteria colony?

4-phase dilution streak

  1. What plating method is used to grow multiple types of bacterial colonies? Quadrant growth method Answer the following questions.
  2. Based on the 4-phase dilution streaking experiment, in what phase were bacterial isolates (colonies) observed? Individual colonies were observed within Phase 3.
  3. Identify the plating method (below) as demonstrated in the lab. Quadrant growth
  4. Identify the organism growing on the TOP half of the agar and describe the observed hemolytic properties. Staph Aureus; Beta hemolysis is observed based on the zones of clearing within the red agar.
  5. Would you expect to see a color change when pseudomonas is streaked onto an EMB agar plate? Explain your answer. No. There would not be a color change because pseudomonas does not ferment lactose.

Answer the following questions

  1. Given the following image, determine whether the bacterial sample is resistant or susceptible to the following antibiotics. A—24mm (because radius is given) Susceptible B— 9mm Susceptible, despite small zone of inhibition. C —14mm Resistant This page is here for the instructor to grade your lab notebook. Each lab notebook is worth up to 5 points. The grade for your notebook will show on this page once your instructor has finished grading your lab. Please indicate below that you have finished your lab notebook by entering your name in the answer blank. I have finished my lab notebook for this lab: Lab Notebook 5 PL05 Testing bacteria for antibiotic sensitivity

Objective: To determine the threshold of antibiotic sensitivity across bacterial strains using the Kirby-Bauer method. (Aka Standardized Disc Susceptibility Test) Procedure:

**1. Streak bacteria A across an LB agar plate for confluent growth using a sterile L- spreader

  1. Evenly place the paper antibiotic discs on the plate
  2. Invert plate and incubate at 37°C overnight
  3. Measure zones of inhibition (diameter)
  4. Compare results with sensitivity chart Results:
  • List diameter of zone of inhibition for each disc
  • Reference chart to determine sensitivity level: Resistant > Intermediate > Susceptible Recorded measurements (optional) Antibiotic Measurements (mm) Vancomycin 30 Clindamycin 16 Oxacillin 17 Tobramycin 22 Erythromycin 24 Penicillin 36 Gentamicin 10 Cefazolin 19** Answer the following questions
  1. True or False. The presence of cytochrome C is often associated with aerobic bacteria. True
  2. Which STD is most often identified using the Oxidase test? Gonorrhea

C. Alpha D. None of the above. B. Beta.

  1. As stated in the lab video, an example of a lipase-positive bacterium is: A. Staph aureus B. Pseudomonas C. Bacillus subtilis D. Streptococcus C. Bacillus subtilis Answer the following. An unknown bacterium (Sample A) was tested using several of the rapid, qualitative tests described within this lab lecture. Using the images of the results below indicate the lab results for each test (1-3) as either positive or negative, then using the decision tree identify the unknown bacterium by the corresponding letter. The unknown sample is: Oxidase-positive (aerobic), catalase negative and coagulase-positive, which on the decision tree, corresponds with the letter C. Answer the following questions
  1. In order to assess a liquid bacterial culture for tryptophan breakdown, ~5 drops of reagent is added. Kovac’s
  2. How would a microorganism be classified (positive or negative) if a pink/red band was observed at the top of a liquid culture containing tryptophan? Positive. The microorganism is capable of breaking down tryptophan into indole and would thus be classified as indole positive.
  3. Name one advantage that the ability to breakdown tryptophan brings to a microorganism. An increased resistance to drugs/medications OR an increased ability to survive harsh environments—often seen via spore formation. Answer the following questions
  4. An enzymatic test that assesses the ability of a microorganism to produce hydrogen sulfide gas and/or ferment sugar is known as the test. TSI (triple sugar iron) test.
  5. What color(s) was the TSI agar slant containing Salmonella? Yellow and Black. The agar slant was yellow at the bottom while black on the sloped gradient portion of the agar.
  6. Enteric bacteria are often found where? Give an example of one. Enteric bacteria around found in either the intestines or gut. Examples given in the video were either Salmonella or Shigella. Answer the following questions
  7. According to the lab module, which 5 wells of the API strip should be layered with mineral oil? ADH, LDC, ODC, H2S and URE
  8. How many milliliters of water were added to the tray prior to incubating the strip at 37C overnight?

Answer the following questions

  1. In a Western blot are separated based on its size. proteins
  2. When setting up a western blot, what is the purpose of the blocking step post-transfer? Blocking prevents non-specific binding of the antibody—you only want the antibody to bind to its specific target.
  3. When developing a western blot what two factors influence the intensity of the band? Both the amount of protein loaded as well as the duration (time) of development is directly proportional to band intensity.
  4. Identify (specific name) given to the region of the western blot indicated by the arrow. The arrow is pointing to the dye front. Answer the following questions
  5. What is the common name for agglutination? Clumping
  1. In the wet lab portion of the video, what pathogen was the agglutination assay specifically designed to test for? Choose all that apply. A. E coli B. Salmonella C. Staph D. Strep C. Staph
  2. What was the purpose of the first quadrant of the agglutination assay containing only the reagent? The first quadrant served as the reagent only negative control—you want to ensure the reagent by itself does not clump but rather requires the presence of Staph.
  3. Based on the image below, which row (A or B) is negative for agglutination? Row A is negative for agglutination.
  4. A patient with type O blood is sent to the lab for a blood-clotting assessment. Since type O blood contains no antigens, which quadrant (#1-6) best depicts the result you would expect to see once the assay is complete? Quadrant 6 shows no signs of agglutination, which is only possible in the presence of antigens. Since Type O blood has no antigens, no clumping will occur during the test. Note: Quadrant 2 was stated to have clumping (albeit minimal) during the wet lab and is thus not an acceptable answer.