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Gene, genetic transformation, The Act of Transformation
Typology: Lab Reports
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In this lab you will perform a procedure known as genetic transformation. Remember that a gene is a piece of DNA which provides the instructions for making (codes for) a protein. This protein gives an organism a particular trait. Genetic transformation literally means “change caused by genes,” and involves the insertion of a gene into an organism in order to change the organism’s trait. Genetic transformation is used in many areas of biotechnology. In agriculture, genes coding for traits such as frost, pest, or spoilage resistance can be genetically transformed into plants. In bioremediation, bacteria can be genetically transformed with genes enabling them to digest oil spills. In medicine, diseases caused by defective genes are beginning to be treated by gene therapy; that is, by genetically transforming a sick person’s cells with healthy copies of the defective gene that causes the disease. You will use a procedure to transform bacteria with a gene that codes for Green Fluorescent Protein (GFP). The real-life source of this gene is the bioluminescent jellyfish Aequorea victoria. Green Fluorescent Protein causes the jellyfish to fluoresce and glow in the dark. Following the transformation procedure, the bacteria express their newly acquired jellyfish gene and produce the fluorescent protein, which causes them to glow a brilliant green color under ultraviolet light or the correct wavelength of blue light.
In this activity, you will learn about the process of moving genes from one organism to another with the aid of a plasmid. In addition to one large chromosome, bacteria naturally contain one or more small circular pieces of DNA called plasmids. Plasmid DNA usually contains genes for one or more traits that may be beneficial to bacterial survival. In nature, bacteria can transfer plasmids back and forth allowing them to share these beneficial genes. This natural mechanism allows bacteria to adapt to new environments. The recent occurrence of bacterial resistance to antibiotics is due to the transmission of plasmids. Bio-Rad’s unique pGLO plasmid encodes the gene for GFP and a gene for resistance to the antibiotic ampicillin. pGLO also incorporates a special gene regulation system, which can be used to control expression of the fluorescent protein in transformed cells. The gene for GFP can be switched on in transformed cells by adding the sugar arabinose to the cells’ nutrient medium. Selection for cells that have been transformed with pGLO DNA is accomplished by growth on ampillicin plates. Transformed cells will appear white (wild-type phenotype) on plates not containing arabinose, and fluorescent green under blue light when arabinose is included in the nutrient agar medium. You will be provided with the tools and a protocol for performing genetic transformation. Your task will be to:
Consideration 1 : How Can I Tell if Cells Have Been Genetically Transformed?
Recall that the goal of genetic transformation is to change an organism’s traits, also known as their phenotype. Before any change in the phenotype of an organism can be detected, a thorough examination of its natural (pre-transformation) phenotype must be made. Look at the colonies ofE. coli on your starter plates. List all observable traits or characteristics that can be described and answer the following questions in your lab notebooks:
b) Size of :
a) Number of colonies
Consideration 2 : The Genes
Genetic transformation involves the insertion of some new DNA into theE. coli cells. In addition to one large chromosome, bacteria often contain one or more small circular pieces of DNA called plasmids. Plasmid DNA usually contains genes for more than one trait. Scientists use a process called genetic engineering to insert genes coding for new traits into a plasmid. In this case, the pGLO plasmid has been genetically engineered to carry the GFP gene which codes for the green fluorescent protein, GFP, and a gene (bla) that codes for a protein that gives the bacteria resistance to an antibiotic. The genetically engineered plasmid can then be used to genetically transform bacteria to give them this new trait.
pGLO plasmid DNA
GFP
Flagellum
Pore
Cell wall
Beta-lactamase Bacterial (antibiotic resistance) chromosomal DNA
The following pre-transformation observations of E. coli might provide baseline data to make reference to when attempting to determine if any genetic transformation has occurred.
Select starter colonies that are "fat" (ie: 1–2 mm in diameter). It is important to take individual colonies (not a swab of bacteria from the dense portion of the plate), since the bacteria must be actively growing to achieve high transforation efficiency. Choose only bacterial colonies that are uniformly circular with smooth edges. Pick up the +pGLO tube and immerse the loop into the transformation solution at the bottom of the tube. Spin the loop between your index finger and thumb until the entire colony is dispersed in the transformation solution (with no floating chunks). Place the tube back in the tube rack in the ice. Using a new sterile loop, repeat for the -pGLO tube and close the tube. Place used loops in the bleach solution for reuse.
Pipet 7 μl of pGLO plasmid into the +pGLO tube & mix. Do not add plasmid DNA to the - pGLO tube. Close both the +pGLO and -pGLO tubes and return them to the rack on ice.
+pGLO
Ice
(+pGLO)
pGLO Plasmid DNA (+pGLO) (-pGLO)
(-pGLO)
+pGLO
and (-) pGLO tubes into the water bath set at 42oC, for exactly 50 sec. When the 50 sec are done, place both tubes immediately back on ice. For the best transformation results, the transfer from the ice (0°C) to 42°C and then back to the ice must be rapid. Incubate tubes on ice for 2 min.
Water bath
LB/amp
pGLO LB/amp/ara
pGLO LB/amp
pGLO LB
pGLO
Ice 42°C for 50 sec Ice
Ice
Spread the suspensions evenly around thesurface of the LB nutrient agar by quickly skating the flat surface of a new sterile loop back and forth across the plate surface. DO NOT PRESS TOO DEEP INTO THE AGAR. Uncover one plate at a time and re-cover immediately after spreading the suspension of cells. This will minimize contamination. Allow the liquid to sink in for a few minutes before inverting and stacking.
LB
- p
LB/amp
- p
L (^) B/amp
B /amp/ara
Review Questions Before collecting data and analyzing your results answer the following questions in your lab notebooks.
Data Collection and Analysis
A. Data Collection
After one day, observe the results you obtained from the transformation lab first under normal room lighting. Then use the blue light imaging station and "dark room" box with your phones to view and take pictures of each of your plates.
Observations +pGLO LB/amp
+pGLO LB/amp/ara
Observations -pGLO LB/amp
-pGLO Control plates LB
Transformation plates