pGLO Transformation Lab, Lab Reports of Genetics

Gene, genetic transformation, The Act of Transformation

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2020/2021

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pGLO Transformation
Introduction to Transformation
In this lab you will perform a procedure known as genetic transformation. Remember that a gene is
a piece of DNA which provides the instructions for making (codes for) a protein. This protein gives an
organism a particular trait. Genetic transformation literally means “change caused by genes,” and
involves the insertion of a gene into an organism in order to change the organism’s trait. Genetic
transformation is used in many areas of biotechnology. In agriculture, genes coding for traits such as
frost, pest, or spoilage resistance can be genetically transformed into plants. In bioremediation,
bacteria can be genetically transformed with genes enabling them to digest oil spills. In medicine,
diseases caused by defective genes are beginning to be treated by gene therapy; that is, by genetically
transforming a sick person’s cells with healthy copies of the defective gene that causes the disease.
You will use a procedure to transform bacteria with a gene that codes for Green Fluorescent
Protein (GFP). The real-life source of this gene is the bioluminescent jellyfish
Aequorea victoria
. Green
Fluorescent Protein causes the jellyfish to fluoresce and glow in the dark. Following the transformation
procedure, the bacteria express their newly acquired jellyfish gene and produce the fluorescent protein,
which causes them to glow a brilliant green color under ultraviolet light or the correct wavelength of blue
light.
In this activity, you will learn about the process of moving genes from one organism to another with
the aid of a plasmid. In addition to one large chromosome, bacteria naturally contain one or more small
circular pieces of DNA called plasmids. Plasmid DNA usually contains genes for one or more traits that
may be beneficial to bacterial survival. In nature, bacteria can transfer plasmids back and forth allowing
them to share these beneficial genes. This natural mechanism allows bacteria to adapt to new
environments. The recent occurrence of bacterial resistance to antibiotics is due to the transmission of
plasmids.
Bio-Rad’s unique pGLO plasmid encodes the gene for GFP and a gene for resistance to the antibiotic
ampicillin. pGLO also incorporates a special gene regulation system, which can be used to control
expression of the fluorescent protein in transformed cells. The gene for GFP can be switched on in
transformed cells by adding the sugar arabinose to the cells’ nutrient medium. Selection for cells that have
been transformed with pGLO DNA is accomplished by growth on ampillicin plates. Transformed cells will
appear white (wild-type phenotype) on plates not containing arabinose, and fluorescent green under blue
light when arabinose is included in the nutrient agar medium.
You will be provided with the tools and a protocol for performing genetic transformation.
Your task will be to:
1. Do the genetic transformation.
2. Determine the degree of success in your efforts to genetically alter an organism.
Consideration 1: How Can I Tell if Cells Have Been Genetically Transformed?
Recall that the goal of genetic transformation is to change an organism’s traits, also known as
their phenotype. Before any change in the phenotype of an organism can be detected, a thorough
examination of its natural (pre-transformation) phenotype must be made. Look at the colonies of
E.
coli
on your starter plates. List all observable
traits or characteristics that can be described and answer the following questions in your lab
notebooks:
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pGLO Transformation

Introduction to Transformation

In this lab you will perform a procedure known as genetic transformation. Remember that a gene is a piece of DNA which provides the instructions for making (codes for) a protein. This protein gives an organism a particular trait. Genetic transformation literally means “change caused by genes,” and involves the insertion of a gene into an organism in order to change the organism’s trait. Genetic transformation is used in many areas of biotechnology. In agriculture, genes coding for traits such as frost, pest, or spoilage resistance can be genetically transformed into plants. In bioremediation, bacteria can be genetically transformed with genes enabling them to digest oil spills. In medicine, diseases caused by defective genes are beginning to be treated by gene therapy; that is, by genetically transforming a sick person’s cells with healthy copies of the defective gene that causes the disease. You will use a procedure to transform bacteria with a gene that codes for Green Fluorescent Protein (GFP). The real-life source of this gene is the bioluminescent jellyfish Aequorea victoria. Green Fluorescent Protein causes the jellyfish to fluoresce and glow in the dark. Following the transformation procedure, the bacteria express their newly acquired jellyfish gene and produce the fluorescent protein, which causes them to glow a brilliant green color under ultraviolet light or the correct wavelength of blue light.

In this activity, you will learn about the process of moving genes from one organism to another with the aid of a plasmid. In addition to one large chromosome, bacteria naturally contain one or more small circular pieces of DNA called plasmids. Plasmid DNA usually contains genes for one or more traits that may be beneficial to bacterial survival. In nature, bacteria can transfer plasmids back and forth allowing them to share these beneficial genes. This natural mechanism allows bacteria to adapt to new environments. The recent occurrence of bacterial resistance to antibiotics is due to the transmission of plasmids. Bio-Rad’s unique pGLO plasmid encodes the gene for GFP and a gene for resistance to the antibiotic ampicillin. pGLO also incorporates a special gene regulation system, which can be used to control expression of the fluorescent protein in transformed cells. The gene for GFP can be switched on in transformed cells by adding the sugar arabinose to the cells’ nutrient medium. Selection for cells that have been transformed with pGLO DNA is accomplished by growth on ampillicin plates. Transformed cells will appear white (wild-type phenotype) on plates not containing arabinose, and fluorescent green under blue light when arabinose is included in the nutrient agar medium. You will be provided with the tools and a protocol for performing genetic transformation. Your task will be to:

  1. Do the genetic transformation.
  2. Determine the degree of success in your efforts to genetically alter an organism.

Consideration 1 : How Can I Tell if Cells Have Been Genetically Transformed?

Recall that the goal of genetic transformation is to change an organism’s traits, also known as their phenotype. Before any change in the phenotype of an organism can be detected, a thorough examination of its natural (pre-transformation) phenotype must be made. Look at the colonies ofE. coli on your starter plates. List all observable traits or characteristics that can be described and answer the following questions in your lab notebooks:

b) Size of :

a) Number of colonies

  1. the largest colony
  2. the smallest colony
  3. the majority of colonies b) Color of the colonies c) Distribution of the colonies on the plate d) Visible appearance when viewed with blue light box
  1. Describe in your notebooks how you could use two LB/agar plates, someE. coli and some ampicillin to determine howE. coli cells are affected by ampicillin.
  2. What would you expect your experimental results to indicate about the effect of ampicillin on theE. coli cells?

Consideration 2 : The Genes

Genetic transformation involves the insertion of some new DNA into theE. coli cells. In addition to one large chromosome, bacteria often contain one or more small circular pieces of DNA called plasmids. Plasmid DNA usually contains genes for more than one trait. Scientists use a process called genetic engineering to insert genes coding for new traits into a plasmid. In this case, the pGLO plasmid has been genetically engineered to carry the GFP gene which codes for the green fluorescent protein, GFP, and a gene (bla) that codes for a protein that gives the bacteria resistance to an antibiotic. The genetically engineered plasmid can then be used to genetically transform bacteria to give them this new trait.

pGLO plasmid DNA

GFP

Flagellum

Pore

Cell wall

Beta-lactamase Bacterial (antibiotic resistance) chromosomal DNA

The following pre-transformation observations of E. coli might provide baseline data to make reference to when attempting to determine if any genetic transformation has occurred.

  1. Place the tubes on ice.
  2. Use a sterile loop to pick up 2–4 large colonies of bacteria from your starter plate.

Select starter colonies that are "fat" (ie: 1–2 mm in diameter). It is important to take individual colonies (not a swab of bacteria from the dense portion of the plate), since the bacteria must be actively growing to achieve high transforation efficiency. Choose only bacterial colonies that are uniformly circular with smooth edges. Pick up the +pGLO tube and immerse the loop into the transformation solution at the bottom of the tube. Spin the loop between your index finger and thumb until the entire colony is dispersed in the transformation solution (with no floating chunks). Place the tube back in the tube rack in the ice. Using a new sterile loop, repeat for the -pGLO tube and close the tube. Place used loops in the bleach solution for reuse.

  1. Examine the pGLO DNA solution with the blue light imaging stations. Note your observations.

Pipet 7 μl of pGLO plasmid into the +pGLO tube & mix. Do not add plasmid DNA to the - pGLO tube. Close both the +pGLO and -pGLO tubes and return them to the rack on ice.

+pGLO

Ice

(+pGLO)

pGLO Plasmid DNA (+pGLO) (-pGLO)

(-pGLO)

+pGLO

  1. Incubate the tubes on ice for 10 min. Make sure to push the tubes all the way down in the ice so the bottom of the tubes make significant contact with the ice.
  2. While the tubes are sitting on ice, label your four LB nutrient agar plates on the bottom edges (not the lid) as follows:
  • Label one LB/amp plate: + pGLO
  • Label the LB/amp/ara plate: + pGLO
  • Label the other LB/amp plate: - pGLO
  • Label the LB plate: - pGLO
  1. Heat shock. Bring your tubes on ice to the water bath. Transfer both the (+) pGLO

and (-) pGLO tubes into the water bath set at 42oC, for exactly 50 sec. When the 50 sec are done, place both tubes immediately back on ice. For the best transformation results, the transfer from the ice (0°C) to 42°C and then back to the ice must be rapid. Incubate tubes on ice for 2 min.

Water bath

LB/amp

pGLO LB/amp/ara

pGLO LB/amp

pGLO LB

pGLO

Ice 42°C for 50 sec Ice

Ice

  1. Use a new sterile loop for each solution ( one loop for + pGLO and a different loop for - pGLO).

Spread the suspensions evenly around thesurface of the LB nutrient agar by quickly skating the flat surface of a new sterile loop back and forth across the plate surface. DO NOT PRESS TOO DEEP INTO THE AGAR. Uncover one plate at a time and re-cover immediately after spreading the suspension of cells. This will minimize contamination. Allow the liquid to sink in for a few minutes before inverting and stacking.

  1. Stack up your plates and tape them together. Put your group name and class period on the bottom of the stack and place the stack of plates upside down in the 37°C incubator until the next day. The plates are inverted to prevent condensation on the lid which may drip onto the culture and interfere with your results.

LB

- p

G

O

L

LB/amp

- p

G

O

L

L (^) B/amp

+ p

G

O

L L

B /amp/ara

+p

G

O

L

Review Questions Before collecting data and analyzing your results answer the following questions in your lab notebooks.

  1. On which of the plates would you expect to find bacteria most like the original non-transformedE. coli colonies you initially observed? Explain your predictions.
  2. If there are any genetically transformed bacterial cells, on which plate(s) would they most likely be located? Explain your predictions.
  3. Which plates should be compared to determine if any genetic transformation has occurred? Why?
  4. What is meant by a control plate? What purpose does a control serve?

Data Collection and Analysis

A. Data Collection

After one day, observe the results you obtained from the transformation lab first under normal room lighting. Then use the blue light imaging station and "dark room" box with your phones to view and take pictures of each of your plates.

  1. Carefully observe and draw what you see on each of the four plates. Put your drawings in a data table like the one below in your lab notebooks. Record your data to allow you to compare observations of the “ + pGLO ” cells with your observations for the non- transformedE. coli. Write down the following observations for each plate in your notebooks.
  2. How much bacterial growth do you see on each plate, relatively speaking?
  3. What color are the bacteria?
  4. How many bacterial colonies are on each plate (count the spots you see or say "lawn" if the bacteria are growing continuously across the plate).

Observations +pGLO LB/amp

+pGLO LB/amp/ara

Observations -pGLO LB/amp

-pGLO Control plates LB

Transformation plates