IB426 Fall 2009 Exam Study: Earth's Formation, Life Origin, Physiology, Digestion, Study notes of Biology

A study guide for the ib426 fall 2009 exam, covering topics on the formation of the earth and the origin of life, major speciation events, contrasting physiology types, isometry and allometry, water properties, and food digestion. Key concepts include planetary formation hypotheses, stromatolites, evolutionary adaptation, water strider behavior, and glycolysis.

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Study Guide for Fall 2009 IB426 Exam I
Formation of Planet Earth, Origin of Life, and Major Speciation Events
Nebula hypothesis of planetary formation
How did planet Earth form? (melting Æ differentiation)
Age of Earth; how did Earth’s moon form?
What is stromatolite?
Age of first life
Age of first Eukaryote
Implication of L-isomer of amino acid in origin of life.
What are the hypotheses of the origin of life? Inference from Universal Tree of Life (Woese),
o and Reticulate Tree of Life (Doolittle and others).
Ring of Life (Rivera & Lake) – what is the inference from whole genome sequences regarding
o the origin of eukaryote?
What is “endosymbiosis” in the context of evolution of life? What were involved in the two major
endosymbiotic events that led to the formation of mitochondria and chloroplast?
What is chanoflagellate?
What is Cambrian Explosion and when did it occur?
How were mass extinction events at boundaries of Periods and/or Era of Earth’s history
o important in animal speciation?
Which is the largest invertebrate group of animals?
Which is the largest vertebrate group of animals?
Contrast between comparative physiology, environmental/ecological physiology and evolutionary
physiology.
Definition of acclimation and acclimatization.
Definition of evolutionary adaptation – how does it occur?
What is phenotypic plasticity? Is it heritable?
Example of short term compensatory response vs adaptation over evolutionary time.
Range of environments.
Isometry and allometry
Do surface area and volume (volume .body size) of an animal increase at the same rate as the animal
grows bigger? If they don’t, why are the rates different?
Isometric scaling factor – what is it, and how is it derived?
Why does allometric scaling mean?
What is the smallest vertebrate animal? What is the largest? How many orders of magnitude different in
size are they?
Why a mouse cannot be scaled isometrically to the size of an elephant and produce a
physiologically functional animal?
Water properties and water walker/runner.
What are the 2 important physical properties of water and some examples of their relevance to
biochemical and physiological function.
Colligative effect – relationship between solute concentration and osmotic pressure
How do water striders remain stationary on the water surface? What force/s support them? How does the
equation: MC = Mg /
F
P apply? What do the terms in the equation represent?
All 342 species of water striders over 3 orders of magnitude of body size studied by Hu et al (2003) can
remain stationary on the water surface. Why? What’s the rate of leg length growth versus rate of body
size growth?
What is Denny’s Paradox in regard to water strider?
What is momentum transfer, and how is it achieved by water strider to move across water?
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  • Study Guide for Fall 2009 IB426 Exam I
  • Formation of Planet Earth, Origin of Life, and Major Speciation Events Š Nebula hypothesis of planetary formation Š How did planet Earth form? (melting Æ differentiation) Š Age of Earth; how did Earth’s moon form? Š What is stromatolite? Š Age of first life Š Age of first Eukaryote Š Implication of L-isomer of amino acid in origin of life. Š What are the hypotheses of the origin of life? Inference from Universal Tree of Life (Woese), o and Reticulate Tree of Life (Doolittle and others). Š Ring of Life (Rivera & Lake) – what is the inference from whole genome sequences regarding o the origin of eukaryote? Š What is “endosymbiosis” in the context of evolution of life? What were involved in the two major endosymbiotic events that led to the formation of mitochondria and chloroplast? Š What is chanoflagellate? Š What is Cambrian Explosion and when did it occur? Š How were mass extinction events at boundaries of Periods and/or Era of Earth’s history o important in animal speciation? Š Which is the largest invertebrate group of animals? Š Which is the largest vertebrate group of animals?
  • Contrast between comparative physiology, environmental/ecological physiology and evolutionary physiology. Š Definition of acclimation and acclimatization. Š Definition of evolutionary adaptation – how does it occur? Š What is phenotypic plasticity? Is it heritable? Š Example of short term compensatory response vs adaptation over evolutionary time. Š Range of environments.
  • Isometry and allometry Š Do surface area and volume (volume .body size) of an animal increase at the same rate as the animal grows bigger? If they don’t, why are the rates different? Š Isometric scaling factor – what is it, and how is it derived? Š Why does allometric scaling mean? Š What is the smallest vertebrate animal? What is the largest? How many orders of magnitude different in size are they? Š Why a mouse cannot be scaled isometrically to the size of an elephant and produce a physiologically functional animal?
  • Water properties and water walker/runner. Š What are the 2 important physical properties of water and some examples of their relevance to biochemical and physiological function. Colligative effect – relationship between solute concentration and osmotic pressure Š How do water striders remain stationary on the water surface? What force/s support them? How does the

equation: MC = Mg / F P apply? What do the terms in the equation represent?

Š All 342 species of water striders over 3 orders of magnitude of body size studied by Hu et al (2003) can remain stationary on the water surface. Why? What’s the rate of leg length growth versus rate of body size growth? Š What is Denny’s Paradox in regard to water strider? Š What is momentum transfer, and how is it achieved by water strider to move across water?

Š Can basilisk lizard remain stationary on the water surface? Why, and how does the equation: MC = Mg / F

P apply? Š What are forces and time constraint in each running step that the basilisk lizard must achieve/meet to be able to run across water? Š Why basilisk >200g can’t run on water? What happen to the range of slap impulse that can be generated as the lizard grows bigger and bigger? What is the major morphological scaling factor that contributes to the lizard’s ability to produce effective slap impulse? Š How do bigger lizards compensate for ineffective slaps?

  • Water, ion and osmotic physiology Š Fluid mosaic model of cell membrane. Š Why some molecules can get through cell membrane readily, and others (most molecules) cannot without the assistance of a membrane channel or transporter Š Main difference in Passive vs non-passive transport. Š What are facilitated diffusion, primary active transport, secondary active transport? Š What are uniport, antiport, symport? Š What is the mechanism of the ubiquitous and important Na pump (ie. the Na+/K+ ATPase)? Š It’s now found that water doesn’t diffuse through cell membrane passively. What’s the name of the water channel?

Non-renal osmoregulation Š Solute concentrations - what is the difference between molarity and osmolarity? Š The major ions inside (intracellular) and outside (extracellular) cells are Na+ and K+. Intracellular and extracellular concentrations of Na and K are distinct. What are they in a typical vertebrate animal. Š What is the osmotic concentration (osmolarity) of most seawater? What are the major ions in the seawater and their concentrations? Š What is the osmotic concentration of freshwater? Š Meaning of osmoconformer and osmoregulator, euryhaline and stenohaline. Š Osmotic relationships – meaning of do hyper-, iso-, and hypo-osmotic? Examples. Š What issues of ion/water balance do various types of vertebrate animals face in their fresh water or salt water habitat? Š Na+ transport (against concentration gradient) by frog skin - Koefoed-Ussing and Krogh models. Mechanism – the transporters and ions involved. Š Salt extrusion (against concentration gradient) by teleost chloride cell, avian and reptilian salt gland, shark rectal gland. Mechanism – the transporters and ions involved.

Renal osmoregulation Š What are protonehpridia and Metanephridia, and how do they work in general Š What are podocytes? Š Formation of primary urine - what is ultrafiltration versus active secretion? Vertebrate kidney – anatomy of the kidney and the nephron; the transport properties of the different sections of the nephron tubule, i.e. proximal tubule, descending limb and ascending limb of the loop of Henle, distal tubule and collecting duct. Š What is the countercurrent multiplier effect that produce hyperosmotic secondary urine. Š How does blood level of ADH (antidiuretic hormone) affect water reabsorption at the collecting duct?

Nitrogenous waste excretion Š Structure of urea. Š Transamination-deamination. Š Urea cycle – key points in pathway, cellular location of key points. Š Meaning of ammonotelic, ureotelic and uricotelic Š How do you predict what form of nitrogenous waste a particular animal would excrete?