Three Factor Crosses - Cell Biology - Lecture Notes, Study notes of Cell Biology

These are the important key points of lecture slides of Cell Biology are: Three Factor Crosses, Recessive Traits, Vestigial Wings, Short Bristles, Distinct Phenotypes, Crossover Classes, Two Possible Orders, Significant Measurement, Three Heterozygous Markers, Possible Combinations

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2012/2013

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Lecture 7 Lecture 7
Lecture 7Lecture 7
Lecture 7
Last time we discussed how to measure the distance between two genes on the X
chromosome. To do this we used the trick of looking only at male progeny so the
genotype of the X chromosome could be scored directly since these flies only carry one
copy of the X. For autosomes, we can have the same ability to score all recombinant
classes by crossing to a homozygous recessive individual. This is known as a test-cross.
Consider the recessive traits vestigial wings and short bristles that are specified by two
different genes on the same autosome (non-sex chromosome).
+ ++ +
+ ++ +
+ +
vg shvg sh
vg shvg sh
vg sh xOO vg shvg sh
vg shvg sh
vg sh + ++ +
+ ++ +
+ +
vg shvg sh
vg shvg sh
vg sh
All F1: + ++ +
+ ++ +
+ +
The F1 flies are heterozygous for both genes so we are in position to see how
oftencrossovers between these chromosomes occur in meiosis by doing a test-cross.
O vg shvg sh
vg shvg sh
vg sh vg shvg sh
vg shvg sh
vg sh
x O
+ ++ +
+ ++ +
+ + vg shvg sh
vg shvg sh
vg sh
(Note that the progeny vg shvg sh
vg shvg sh
vg sh 458
have distinct phenotypes) vg shvg sh
vg shvg sh
vg sh
vgvg
vgvg
vg shsh
shsh
sh 442
+ ++ +
+ ++ +
+ +
vg +vg +
vg +vg +
vg +
vg shvg sh
vg shvg sh
vg sh 47
(crossover classes)
++
++
+ shsh
shsh
sh 53
vg shvg sh
vg shvg sh
vg sh
100
The distance between vgvg
vgvg
vg and shsh
shsh
sh = 100 x = 10 cM
1000
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Lecture 7Lecture 7Lecture 7Lecture 7Lecture 7

Last time we discussed how to measure the distance between two genes on the X chromosome. To do this we used the trick of looking only at male progeny so the genotype of the X chromosome could be scored directly since these flies only carry one copy of the X. For autosomes, we can have the same ability to score all recombinant classes by crossing to a homozygous recessive individual. This is known as a test-cross.

Consider the recessive traits vestigial wings and short bristles that are specified by two different genes on the same autosome (non-sex chromosome).

vgvgvgvgvg shshshshsh (^) x +++++^ +++++

O O

vgvgvgvgvg shshshshsh +++++^ +++++

All F^ vgvgvgvgvg^ shshshshsh 1 :^ +++++ +++++

The F 1 flies are heterozygous for both genes so we are in position to see how oftencrossovers between these chromosomes occur in meiosis by doing a test-cross.

O vgvgvgvgvg^ shshshshsh^

x vgvgvgvgvg^ shshshshsh

O

+++++ +++++ ↓ vgvgvgvgvg^ shshshshsh

(Note that the progeny vgvgvgvgvg^ shshshshsh^458 have distinct phenotypes) vgvgvgvgvg^ shshshshsh

vgvgvgvgvg shshshshsh (^442) +++++ +++++ vgvg vgvgvg +++++ vgvgvgvgvg shshshshsh 47 (crossover classes) +++++ shshshshsh vgvgvgvgvg shshshshsh^53

The distance between (^) vgvgvgvgvg and (^) shshshshsh = 100 x 100 = 10 cM 1000

Now we’ll do a second cross. Note that the key is to set up a parent that is heterozygous at two loci.

O shshshshsh^ +++++^ x O +++++^ cncncncncn (cinnabar eyes)

shshshshsh +++++^ +++++^ cncncncncn

shshshshsh +++++ shsh^ shshsh^ cncncncncn

O x^ O

+++++ cncncncncn shshshshsh cncncncncn

shshshshsh cncncncncn^12 shshshshsh cncncncncn crossover classes +++++ +++++ (^8) shshshshsh cncncncncn

+++++^ cncncncncn^493 shshshshsh cncncncncn

shshshshsh +++++^487 shshshshsh cncncncncn

Distance between shshshshsh and cncncncncn = 2 cM

There are two possible orders. We could resolve them by measuring the cncncncncn to vgvgvgvgvg distance, which should be either 8 cM or 12 cM depending on the order. However, it’s difficult in practice to get a statistically significant measurement that would cleanly distinguish between these possibilities.

A better way to find the order is to set up all three heterozygous markers at the same time and to look at the frequencies of the eight different gamete genotypes.

There is a simple system for evaluating 3-factor crosses:

  1. Group recombinant classes into reciprocal pairs.
  2. The most frequent pair is the parental classes.
  3. Derive the gene order from the least frequent pair, which are the double cross- over classes.
  4. The single crossover frequency for the two intervals can be obtained by adding the frequency of each of the single crossover class pairs to the frequency of the double crossover class pair. (In the present example the double crossovers are so rare that their inclusion doesn’t matter).

shshsh shsh cncncncncn vgvgvgvgvg