Determinants of Canopy Reflectance and Chlorophyll Concentrations, Study notes of Environmental Science

The three primary factors influencing canopy reflectance: spectral scattering/absorbing properties of canopy components, canopy architecture, and directions of illumination and view. Additionally, it explores the relationship between chlorophyll concentrations, carbon assimilation, and canopy reflectance. The document also introduces vegetation indices as a means of estimating leaf area index (lai) and fraction of photosynthetically active radiation intercepted (fpar).

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Uploaded on 07/30/2009

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Three factors determine canopy
reflectance
1. Spectral scattering/absorbing properties of canopy
components. (leaves, stems, flowers, fruit, soil, etc.)
2. Canopy architecture. (above-ground biomass; leaf area index;
arrangement of foliage in x,y,z,θ,φ space – for example, are all leaves
vertical and located in one layer – or perhaps they are arranged in
space like the area on a sphere; etc.)
3. Directions of illumination and view. (Is the sun the only
significant source – or does aerosol- or Rayleigh-scattered light
provide hemispherical illumination; is direction of view toward the hot
spot or nadir or …)
Three factors determine canopy
reflectance
2. Canopy architecture. (above-ground biomass;
leaf area index;arrangement of foliage in x,y,z,θ,φ space –
for example, are all leaves vertical and located in one layer
or perhaps they are arranged in space like the area on a
sphere; etc.)
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Three factors determine canopy

reflectance

1. Spectral scattering/absorbing properties of canopy

components. (leaves, stems, flowers, fruit, soil, etc.)

2. Canopy architecture. (above-ground biomass; leaf area index;

arrangement of foliage in x,y,z,θ,φ space – for example, are all leaves

vertical and located in one layer – or perhaps they are arranged in

space like the area on a sphere; etc.)

  1. Directions of illumination and view. (Is the sun the only

significant source – or does aerosol- or Rayleigh-scattered light

provide hemispherical illumination; is direction of view toward the hot

spot or nadir or …)

Three factors determine canopy

reflectance

  1. Canopy architecture. ( above-ground biomass ;

leaf area index ; arrangement of foliage in x,y,z,θ,φ space –

for example, are all leaves vertical and located in one layer

  • or perhaps they are arranged in space like the area on a

sphere; etc.)

Chlorophyll and Carbon Assimilation

Amount of chlorophyll in canopy

Potential carbonassimilation bycanopy

(Concentration x phytomass )

“The big picture”

Chlorophyll Concentrations

chlorophyll concentration

Red or blue wavelengthradiance, reflectance

Wavelength, nm

reflectance(%)

very high leaf area
very low leaf area
sunlit soil

First, notice that Canopy Reflectance varies with Leaf

Area…

On moderately bright soil:

  • In visible canopy reflectance decreases as leaf area per unit ground area (LAI) increases
  • In NIR canopy reflectance increases as LAI increases

Question: How to calculate LAI and FPAR,

fraction of PAR intercepted by canopy?

Conclusion: LAI is a function of reflectance and vice-versa.

Case Study 5: Red and NIR Reflectance by

Canopy Density

NIR reflectance(%)

Total leaf area*meter of canopy

  • (cm

2 )

0 10000 20000 30000 40000 50000 60000

NIR reflectance(%)

red reflectance (%)

Total leaf area*meter of canopy

-1 (cm2)

0 10000 20000 30000 40000 50000 60000

red reflectance (%)

Correlation coefficient between canopy

reflectance and canopy leaf area

is negative in visible and positive in NIR

wavelength

Correlation Coefficient

-1.

Correlation positive
Correlation negative

Correlation = 0.0 at

approximately λ = 0.71μm

wavelength

reflectance(%)

very high leaf area
very low leaf area
sunlit soil

But notice…

Let’s model this effect in the visible using

a single scattering model…

  1. Assume spherical leaf angle distribution.

(Leaf area distributed like area on a sphere)

  1. Decrease of sunlight irradiance with depth z into

canopy follows Beers absorption law:

where LAD is leaf area density (the leaf area per

cubic meter of the canopy), I is the irradiance at

the top of the canopy and c1 is a ‘fudge factor.’

  1. Assume leaves are Lambertian with reflectance ρ.
  2. The radiance of a ∆z layer is

)

cos

1 * *

( ) exp(

i

c LAD z

Irradiancez I

θ

= −

]* [ cos

[

(,,)[ ]*[

r

zLAD

radiancezrrleafareainz

θ

θ φ

∆ = ∆

Estimating the size of the absorption well

wavelength

400 600 800 1000 1200

reflectance(%)

density 1

density 2

density 3

density 4

density 5

density 6

sunlit soil

What are Vegetation Indices?

Vegetation Indices

Vegetation indices (VI) are combinations of spectral

measurements in different wavelengths as recorded by a

radiometric sensor. They aid in the analysis of multispectral

image information by shrinking multidimensional data into a

single value. Huete (1994) defined vegetation indices as:

“ dimensonless, radiometric measures usually involving a

ratio and/or linear combination of the red and near-infrared

(NIR) portions of the spectrum. VI’ s may be computed

from digital counts, at satellite radiances, apparent

reflectances, land-leaving radiances, or surface

reflectances and require no additional ancillary

information other than the measurements

themselves…What VI s specifically measure remains

unclear. They serve as indicators of relative growth and/or

vigor of green vegetation, and are diagnostic of various

biophysical vegetation parameters”.

Vegetation Indices

Vegetation indices (VI’s) can be broken up

into two basic categories:

Ratio based indices – VI’s based on the ratio of two or

more radiance, reflectance, or DN values (or linear

combinations thereof).

Difference indices – VI’s based on the difference

between the spectral response of vegetation and the

soil background.

Common Ratio Indices

Simple Ratio Index (SR) = NIR/R

Normalized Difference Vegetation Index (NDVI) =

NIR R

NIR R

Sensor

Shadow Sunlit Background

Red flux radiation

NIR flux radiation

Composite Canopy Reflectance

Leaf area Density

Composite Canopy Reflectance

0% veg. Cover; LAI = 0

100% veg. Cover; 1

leaf layer; LAI =

50% veg. Cover; 2 leaf

layers; LAI = 1

pixel

33% veg. cover; 3

leaf layers; LAI = 1

Are the reflectances of these 3 pixels the same?

1 m

of leaf area

Composite Canopy Reflectance

Vegetation Index

LAI, LAD

This region of the curve is dominated by a

change in percent vegetation cover

In this region, there is complete

vegetation cover and differences are

due to increasing canopy density-

Additive Reflectance (multiple

scattering)

100% vegetation cover

Recent VIs to remember...

  • There are a Gazillion VIs in the literature...
  • I’ve proposed one...ignore it - and most others in the literature.

Right now, the important VIs to know are:

  • SAVI, Soil Adjusted VI
  • ARVI, Atmospherically Resistant VI
  • SARVI, Soil & Atmospherically Resistant VI
  • EVI, Enhanced VI