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Histopathology Manual Tissue Processing Workflow with detailed explanation and rationale every step. Additional images are added for greater comprehension.
Typology: Lecture notes
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Within a laboratory, the histopathology section is responsible for handling tissue specimens that are affected
by disease and are bound to be observed and examined by the pathologist. It is crucial to handle the tissue specimens
properly or appropriately in order to ensure an accurate diagnosis of the condition of the patient. For the diagnosis to
be possible, the histologic technologist or histotechnologist, who is a specialized medical laboratory technician working
under the supervision of the pathologist, will be responsible for producing a tissue section of good quality, where
microscopic cellular changes can be observed, examined, and interpreted.
Tissue processing utilizes variety of histologic or histopathologic techniques. These techniques are series of
procedures involving 9 major steps namely fixation, dehydration or decalcification, clearing, impregnation or
infiltration, embedding, section cutting or microtomy, staining, mounting, and labelling.
Upon the acquisition and appropriate labelling of the specimen, it must be immersed in a proper fixative, that
could be routine or special, to undergo with the first step, which is fixation. Fixation is the process by which the cells in
the tissue are fixed in a chemical and physical state, and all the biochemical and proteolytic activities within the cells
are prevented, so that the cells or tissues can resist any morphological change or distortion after subsequent
treatment with various reagents. Fixation helps to maintain the architecture of the tissue specimen near to its original
state however, it is also the most critical step in the preparation of histological sections because, if the process is not
carried out under optimal conditions or if delayed, the tissue specimen will be subjected to irreversible damage.
Following fixation could either be dehydration or decalcification. In the process of dehydration, water within the tissue
is removed through the use of increasing concentrations of alcohol. This process is carried out to ensure that the
tissue specimen can be infiltrated with wax. If the tissue sample is a bone or a calcified tissue, dehydration is not
applicable but decalcification is. This process, on the otherhand, will remove calcium ions and will adjust the hard
substance of the sample to the softness of paraffin-embedding medium. The third step, which is clearing, will help in
facilitating the removal of the dehydrating or decalcifying agent through a clearing substance that is miscible to both
dehydrating and impregnating medium. The process, which bridges dehydration and impregnation, will help attain a
completely transparent tissue that will provide an optical clarity for better staining and viewing of the specimen.
The cleared tissue will be, afterwards, impregnated with a suitable wax, such as paraffin or celloidin. After the
infiltration with wax, the tissue is rightfully oriented and placed in a mould that is embedded with molten wax to form
a solidified block that will be utilized for microtomy or sectioning. Take into consideration that in the process of
embedding, correct orientation of the tissue block is important because if it is the other way around, important tissue
components may be missed or damaged during microtomy. The sixth step which follows embedding is the section-
cutting. In this phase, a microtome that will cut the tissue block into ribbons or sections, that are thin enough to be
placed on a slide, is used. Having good techniques in this stage can help in minimizing artifacts or unnecessary
components in your slide and it will also help in providing successful microscopic examination. When the sectioned
tissue is placed on the slide, they are nearly visible under the light microscope that’s why, choosing the proper stain
for the specimen is a must. The staining process itself will help in creating a contrast between tissue components for
easier understanding of their morphology when examined under the microscope. After that, mounting of cover slip is
necessary in order to prolong the preservation of the specimen for future uses or further studies and finally, a
histologic technologist must label the tissue specimen on the slide properly. Proper labelling must include the
necessary information for proper identification and for provision of quality diagnosis for the patient.
Quality is the degree to which healthcare services strive to provide the accurate desired outcomes for patients
and are consistent with current professional knowledge. As pathology is significant to health care, deterioration in the
quality of pathologic services can compromise patient care and lead to adverse health events (Jose, 2013) that’s why,
all the procedures and activities of the histopathology section should be evaluated and monitored accurately through
the concept of quality control. Quality control checks in a histopathology laboratory will include accurate patient
identification, fixation, adequate processing, appropriate embedding techniques, microtomy, unacceptable artifacts
and inspection of controls to determine correctness of special stains and immunohistochemical methods. By following
these protocols or standards, the histologic technologist will not only be allowed to handle the process in the right
manner but he or she will also end up aiding the pathologist with the timely implementation of the accurate treatment
for the patient based on the correct interpretation of the laboratory result.
slices of • Ethyl alcohol in agent container • Paper boat microtome specimen sections in
formalin varying container • Paraffin oven mold • Scalpel • Reagents and xylene
fixed concentrations • Clearing • Melted • Labeling tags • Wooden board solutions of H & • Mountant
human - 70% ethyl agent: paraffin/Paraffin • Wooden or E staining • Cotton
tissues
alcohol
Xylene wax steel trays - Xylene swabs
Scalpel 95% ethyl Forceps
blade alcohol • Tissue blocks alcohol • Cover glass
alcohol
board - LiCO 3
tags • Timer
for • Gauze pads
specimen
molds
100% 1 hour
C) Clearing (2 changes)
Procedure:
is placed in a container containing xylene. Xylene 1 1 hour
agitated for 15 seconds, until the time requirement
is finished. The specimen is subjected to 2 changes
of xylene
Rationale: Although the tissue is now essentially water- Xylene 2 1 hour
free, it still cannot be infiltrated with wax since wax and
ethanol are largely immiscible. An intermediate solvent
must be used which is miscible with ethanol and paraffin
wax. This solvent is usually Xylene and is capable of
displacing ethanol, which in turn will be displaced by
molten paraffin wax. It is also important to note that the
clearing agent removes an amount of fat from the tissue
that may act as a barrier to infiltration. Agitation is done
to allow faster and uniform penetration of the fluid.
D) Impregnation/Infiltration (4 changes)
Procedure:
the temperature of the wax bath be 2-3°C above the
melting point of wax.
containing the melted paraffin. It is subjected to 4
changes of melted paraffin.
✓ Frequent check of the temperature of paraffin baths
is required since higher temperature can cause tissue
shrinkage and hardening.
Rationale: This step allows the wax to infiltrate into the
interices of the tissue, which increases the optical Paraffin wax is melted in which the specimen is
differentiation and hardens the tissue for easy sectioning. subjected to
E) Embedding
Procedure:
using the thumb to flatten. The tissue specimen is removed
the sample in the bottom part of the mold.
temperature before storing in a cold place.
Note: Make sure that the tissue is precisely position in the
bottom of the paper boat molds to avoid specimen to
float. In addition, the surface of the section to be cut to
be placed parallel to the bottom of the mold.
Rationale: Embedding preserves tissue morphology and
giving the tissue support during sectioning. Since the
tissue blocks are very thin in thickness, they need a
supporting medium in which the tissue blocks are Melted paraffin is poured in mold then the tissue sample
embedded. This supporting medium is called embedding was placed and oriented at the bottom of the mold.
medium.
The embedded tissue is
cooled down at room
temperature and stored in
a cool place.
F) Trimming the paraffin tissue blocks
1. Remove the solidified paraffin tissue block from
the mold.
Rationale: The mold is not needed in the process itself,
only the solidified paraffin tissue block must undergo the
next steps.
2. Note the Accession number.
Rationale: This number is assigned to the specimen
when it is received in the laboratory. It is a tracking
mechanism for the specimen. It is also referred to as
a case number.
3. Cut off the excess wax from the block to partly
expose the tissue surface. Trim down the sides of
the paraffin wax with scalpel blade enough for the
block to fit the block holder of the microtome.
Rationale: All sides must be parallel to each other.
This procedure needs to be done in order to have a
high-quality output.
4. Trim off wax from the truncated sides of the
block to aid in ribbon formation.
Rationale: Corrugated edges of the block may hinder
ribbon formation and cause other problems.
Trimmed block with excess paraffin removed and block
face in trapezoid shape.
G) Cutting of sections in a rotary microtome
1. Position the specimen holder and lock the
handwheel of the microtome. Mount the tissue
block in the block holder as required.
Rationale: Locking the handwheel in the upper position
is to ensure safe specimen or blade exchanges, or any
position for safe specimen orientation.
all melted paraffin has been removed, dry slides
in a paraffin has been removed, dry slides in a
paraffin oven set at 45- 50
o C for 30 minutes. Mounting of serial
containing xylene indefinitely until ready for of the glass slide.
staining.
Rationale: Mounting of Tissue Sections are done to
preserve and support a stained section for light
microscopy. In addition, the glass slides help to protect Mounted and dried
the lens of the microscope in having contact with the specimen in a coplin jar
specimen. containing xylene.
1. Preceding stains should be filtered to use.
✓ Filter stains prior to use. Clear the paraffin wax
using Xylene 3 times for 3-4 minutes.
Rationale: To avoid carry-over that may contaminate
the solutions leading to malign slide. Clearing removes
the hydrophobic property of the wax and make the
sample permeable to aqueous solutions.
✓ Rehydration using alcohol (isopropyl or ethanol)
3 times for 3-4 minutes and rinse with distilled
water for 1 minute.
Rationale: To remove the clearing solution which is
Xylene and for easy penetration of aqueous solutions.
2. Staining Process
✓ Stain with hematoxylin solution for 5,8, 10
minutes. Completely submerge the sections onto
the solutions when staining.
Rationale: To stain the nuclei and other basic
structures. For appropriate contrast of the nuclei.
Completely submerging the tissue create equal and fair
penetration of stain to tissue.
✓ Wash the slide with running tap water.
Rationale: Washing with tap water should be performed
in order to avoid contamination and let other deposits to
flow out with water.
✓ Stain with eosin solution for 3,5 minutes. Eosin
alcoholic solution can also be used after the
eosin solution for 30, 60, 90 seconds. Make sure
to cover all the solutions when staining.
Rationale: To stain the cytoplasm to differentiate it
from the nuclei. Covering the solutions avoids
evaporation of some solutions like alcohol and to avoid
exposure that may lead to unknown deposits.
3. Change the water regularly or use tap water
✓ Wash the slide.
Rationale: To remove excess stain from the slide.
Washing with tap water should be performed in order to
avoid contamination and let other deposits to flow out
with water.
✓ Dehydrate the slide in alcohol and clear with
Xylene.
✓ Cover the slide using embedding medium.
Rationale: To remove excess water and to make the
tissue completely transparent.
4. Monitor the slide under the microscope
✓ The slide is ready to be examined in the
microscope.
Rationale: In order to check and monitor if the nuclei
was stained properly and to assess the adequacy of
background stain. The cell nuclei should be color blue
while the cytoplasm should be color pink or red.
1. Take the slide from the xylene while wiping
off the sides of the smear with a gauze or
cotton swab and re-immerse it back into the
xylene solution.
Rationale: Wiping off the sides of the smear with
a gauze or cotton swab will remove the undesirable
sections from the smear.
2. Place slide on a flat surface covered by a clean
sheet of paper.
Rationale: This procedure is done to prepare the
smear for the mounting medium.
3. Put a drop of the mounting medium at the
central portion of the section to be mounted.
Rationale : The mounting medium needs to be at the
central portion of the section for the following procedure
to be done.
4. Lower one side of the cover glass onto the
surface of the section with the other side
following.
Rationale: Lowering one side of the cover glass onto
the surface will allow the mounting medium to be spread
evenly into the smear.
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