Tissue Processing on Histopathology, Lecture notes of Medical Sciences

Histopathology Manual Tissue Processing Workflow with detailed explanation and rationale every step. Additional images are added for greater comprehension.

Typology: Lecture notes

2019/2020

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INTRODUCTION TO TISSUE PROCESSING
Within a laboratory, the histopathology section is responsible for handling tissue specimens that are affected
by disease and are bound to be observed and examined by the pathologist. It is crucial to handle the tissue specimens
properly or appropriately in order to ensure an accurate diagnosis of the condition of the patient. For the diagnosis to
be possible, the histologic technologist or histotechnologist, who is a specialized medical laboratory technician working
under the supervision of the pathologist, will be responsible for producing a tissue section of good quality, where
microscopic cellular changes can be observed, examined, and interpreted.
Tissue processing utilizes variety of histologic or histopathologic techniques. These techniques are series of
procedures involving 9 major steps namely fixation, dehydration or decalcification, clearing, impregnation or
infiltration, embedding, section cutting or microtomy, staining, mounting, and labelling.
Upon the acquisition and appropriate labelling of the specimen, it must be immersed in a proper fixative, that
could be routine or special, to undergo with the first step, which is fixation. Fixation is the process by which the cells in
the tissue are fixed in a chemical and physical state, and all the bi ochemical and proteolytic activities within the cells
are prevented, so that the cells or tissues can resist any morphological change or distortion after subsequent
treatment with various reagents. Fixation helps to maintain the architecture of the tissue specimen near to its original
state however, it is also the most critical step in the preparation of histological sections because, if the process is not
carried out under optimal conditions or if delayed, the tissue specimen will be subjected to irreversible damage.
Following fixation could either be dehydration or decalcification. In the process of dehydration, water within the tissue
is removed through the use of increasing concentrations of alcohol. This process is carried out to ensure that the
tissue specimen can be infiltrated with wax. If the tissue sample is a bone or a calcified tissue, dehydration is not
applicable but decalcification is. This process, on the otherhand, will remove calcium ions and will adjust the hard
substance of the sample to the softness of paraffin-embedding medium. The third step, which is clearing, will help in
facilitating the removal of the dehydrating or decalcifying agent through a clearing substance that is miscible to both
dehydrating and impregnating medium. The process, which bridges dehydration and impregnation, will help attain a
completely transparent tissue that will provide an optical clarity for better staining and viewing of the specimen.
The cleared tissue will be, afterwards, impregnated with a suitable wax, such as paraffin or celloidin. After the
infiltration with wax, the tissue is rightfully oriented and placed in a mould that is embedded with molten wax to form
a solidified block that will be utilized for microtomy or sectioning. Take into consideration that in the process of
embedding, correct orientation of the tissue block is important because if it is the other way around, important tissue
components may be missed or damaged during microtomy. The sixth step which follows embedding is the section-
cutting. In this phase, a microtome that will cut the tissue block into ribbons or sections, that are thin enough to be
placed on a slide, is used. Having good techniques in this stage can help in minimizing artifacts or unnecessary
components in your slide and it will also help in providing successful microscopic examination. When the sectioned
tissue is placed on the slide, they are nearly visible under the light microscope that’s why, choosing the proper stain
for the specimen is a must. The staining process itself will help in creating a contrast between tissue components for
easier understanding of their morphology when examined under the microscope. After that, mounting of cover slip is
necessary in order to prolong the preservation of the specimen for futu re uses or further studies and finally, a
histologic technologist must label the tissue specimen on the slide properly. Proper labelling must include the
necessary information for proper identification and for provision of quality diagnosis for the patient.
Quality is the degree to which healthcare services strive to provide the accurate desired outcomes for patients
and are consistent w ith current professional knowledge. As pathology is significant to health care, deterioration in the
quality of pathologic services can compromise patient care and lead to adverse health events (Jose, 2013) that’s why,
all the procedures and activities of the histopathology section should be evaluated and monitored accurately through
the concept of quality control. Quality control checks in a histopathology laboratory will include accurate patient
identification, fixation, adequate processing, appropriate embedding techniques, microtomy, unacceptable artifacts
and inspection of controls to determine correctness of special stains and immunohistochemical methods. By following
these protocols or standards, the histologic technologist will not only be allowed to handle the process in the right
manner but he or she will also end up aiding the pathologist with the timely implementat ion of the accurate treatment
for the patient based on the correct interpretation of the laboratory result.
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INTRODUCTION TO TISSUE PROCESSING

Within a laboratory, the histopathology section is responsible for handling tissue specimens that are affected

by disease and are bound to be observed and examined by the pathologist. It is crucial to handle the tissue specimens

properly or appropriately in order to ensure an accurate diagnosis of the condition of the patient. For the diagnosis to

be possible, the histologic technologist or histotechnologist, who is a specialized medical laboratory technician working

under the supervision of the pathologist, will be responsible for producing a tissue section of good quality, where

microscopic cellular changes can be observed, examined, and interpreted.

Tissue processing utilizes variety of histologic or histopathologic techniques. These techniques are series of

procedures involving 9 major steps namely fixation, dehydration or decalcification, clearing, impregnation or

infiltration, embedding, section cutting or microtomy, staining, mounting, and labelling.

Upon the acquisition and appropriate labelling of the specimen, it must be immersed in a proper fixative, that

could be routine or special, to undergo with the first step, which is fixation. Fixation is the process by which the cells in

the tissue are fixed in a chemical and physical state, and all the biochemical and proteolytic activities within the cells

are prevented, so that the cells or tissues can resist any morphological change or distortion after subsequent

treatment with various reagents. Fixation helps to maintain the architecture of the tissue specimen near to its original

state however, it is also the most critical step in the preparation of histological sections because, if the process is not

carried out under optimal conditions or if delayed, the tissue specimen will be subjected to irreversible damage.

Following fixation could either be dehydration or decalcification. In the process of dehydration, water within the tissue

is removed through the use of increasing concentrations of alcohol. This process is carried out to ensure that the

tissue specimen can be infiltrated with wax. If the tissue sample is a bone or a calcified tissue, dehydration is not

applicable but decalcification is. This process, on the otherhand, will remove calcium ions and will adjust the hard

substance of the sample to the softness of paraffin-embedding medium. The third step, which is clearing, will help in

facilitating the removal of the dehydrating or decalcifying agent through a clearing substance that is miscible to both

dehydrating and impregnating medium. The process, which bridges dehydration and impregnation, will help attain a

completely transparent tissue that will provide an optical clarity for better staining and viewing of the specimen.

The cleared tissue will be, afterwards, impregnated with a suitable wax, such as paraffin or celloidin. After the

infiltration with wax, the tissue is rightfully oriented and placed in a mould that is embedded with molten wax to form

a solidified block that will be utilized for microtomy or sectioning. Take into consideration that in the process of

embedding, correct orientation of the tissue block is important because if it is the other way around, important tissue

components may be missed or damaged during microtomy. The sixth step which follows embedding is the section-

cutting. In this phase, a microtome that will cut the tissue block into ribbons or sections, that are thin enough to be

placed on a slide, is used. Having good techniques in this stage can help in minimizing artifacts or unnecessary

components in your slide and it will also help in providing successful microscopic examination. When the sectioned

tissue is placed on the slide, they are nearly visible under the light microscope that’s why, choosing the proper stain

for the specimen is a must. The staining process itself will help in creating a contrast between tissue components for

easier understanding of their morphology when examined under the microscope. After that, mounting of cover slip is

necessary in order to prolong the preservation of the specimen for future uses or further studies and finally, a

histologic technologist must label the tissue specimen on the slide properly. Proper labelling must include the

necessary information for proper identification and for provision of quality diagnosis for the patient.

Quality is the degree to which healthcare services strive to provide the accurate desired outcomes for patients

and are consistent with current professional knowledge. As pathology is significant to health care, deterioration in the

quality of pathologic services can compromise patient care and lead to adverse health events (Jose, 2013) that’s why,

all the procedures and activities of the histopathology section should be evaluated and monitored accurately through

the concept of quality control. Quality control checks in a histopathology laboratory will include accurate patient

identification, fixation, adequate processing, appropriate embedding techniques, microtomy, unacceptable artifacts

and inspection of controls to determine correctness of special stains and immunohistochemical methods. By following

these protocols or standards, the histologic technologist will not only be allowed to handle the process in the right

manner but he or she will also end up aiding the pathologist with the timely implementation of the accurate treatment

for the patient based on the correct interpretation of the laboratory result.

MATERIALS FOR TISSUE PROCESSING

FIXATION DEHYDRATION CLEARING INFILTRATION EMBEDDING SECTIONING STAINING MOUNTING LABELING

  • Several • Alcohol container • Clearing • Melted paraffin • Melted paraffin • Rotary • Mounted • Stained • OHP pen

slices of • Ethyl alcohol in agent container • Paper boat microtome specimen sections in

formalin varying container • Paraffin oven mold • Scalpel • Reagents and xylene

fixed concentrations • Clearing • Melted • Labeling tags • Wooden board solutions of H & • Mountant

human - 70% ethyl agent: paraffin/Paraffin • Wooden or E staining • Cotton

tissues

alcohol

Xylene wax steel trays - Xylene swabs

Scalpel 95% ethyl Forceps

  • Paraffin^ tissue^ -^ Absolute^ • Gauze

blade alcohol • Tissue blocks alcohol • Cover glass

  • Layers of - 100% ethyl cassettes
    • Teasing needle - 95% Ethyl gauze alcohol or forceps Alcohol
  • Filter • Forceps
    • Hematoxylin paper (^) • Tissue cassettes
  • Tap water
  • Tissue^
    • 0.5% acid cassettes

alcohol

  • Chopping

board - LiCO 3

  • Forceps - Eosin
  • Labeling • Forceps

tags • Timer

  • Pencil^ • Filter papers
  • Container^ • Cotton swabs

for • Gauze pads

specimen

  • Paper boat

molds

100% 1 hour

C) Clearing (2 changes)

Procedure:

  1. Xylene dissolves alcohol. In this step, the specimen

is placed in a container containing xylene. Xylene 1 1 hour

  1. It is required that every 15 minutes the container is

agitated for 15 seconds, until the time requirement

is finished. The specimen is subjected to 2 changes

of xylene

Rationale: Although the tissue is now essentially water- Xylene 2 1 hour

free, it still cannot be infiltrated with wax since wax and

ethanol are largely immiscible. An intermediate solvent

must be used which is miscible with ethanol and paraffin

wax. This solvent is usually Xylene and is capable of

displacing ethanol, which in turn will be displaced by

molten paraffin wax. It is also important to note that the

clearing agent removes an amount of fat from the tissue

that may act as a barrier to infiltration. Agitation is done

to allow faster and uniform penetration of the fluid.

D) Impregnation/Infiltration (4 changes)

Procedure:

  1. Paraffin wax is melted in the oven, considering that

the temperature of the wax bath be 2-3°C above the

melting point of wax.

  1. The specimen is then submerged in a container

containing the melted paraffin. It is subjected to 4

changes of melted paraffin.

✓ Frequent check of the temperature of paraffin baths

is required since higher temperature can cause tissue

shrinkage and hardening.

Rationale: This step allows the wax to infiltrate into the

interices of the tissue, which increases the optical Paraffin wax is melted in which the specimen is

differentiation and hardens the tissue for easy sectioning. subjected to

E) Embedding

Procedure:

  1. Remove the specimen from the cassette then press

using the thumb to flatten. The tissue specimen is removed

  1. Pour melted paraffin into a paper boat mold. Place from the cassette

the sample in the bottom part of the mold.

  1. Attach label tags and allow to solidify in room

temperature before storing in a cold place.

Note: Make sure that the tissue is precisely position in the

bottom of the paper boat molds to avoid specimen to

float. In addition, the surface of the section to be cut to

be placed parallel to the bottom of the mold.

Rationale: Embedding preserves tissue morphology and

giving the tissue support during sectioning. Since the

tissue blocks are very thin in thickness, they need a

supporting medium in which the tissue blocks are Melted paraffin is poured in mold then the tissue sample

embedded. This supporting medium is called embedding was placed and oriented at the bottom of the mold.

medium.

The embedded tissue is

cooled down at room

temperature and stored in

a cool place.

B. TRIMMING AND CUTTING OF PARAFFIN SECTIONS

F) Trimming the paraffin tissue blocks

1. Remove the solidified paraffin tissue block from

the mold.

Rationale: The mold is not needed in the process itself,

only the solidified paraffin tissue block must undergo the

next steps.

2. Note the Accession number.

Rationale: This number is assigned to the specimen

when it is received in the laboratory. It is a tracking

mechanism for the specimen. It is also referred to as

a case number.

3. Cut off the excess wax from the block to partly

expose the tissue surface. Trim down the sides of

the paraffin wax with scalpel blade enough for the

block to fit the block holder of the microtome.

Rationale: All sides must be parallel to each other.

This procedure needs to be done in order to have a

high-quality output.

4. Trim off wax from the truncated sides of the

block to aid in ribbon formation.

Rationale: Corrugated edges of the block may hinder

ribbon formation and cause other problems.

Trimmed block with excess paraffin removed and block

face in trapezoid shape.

G) Cutting of sections in a rotary microtome

1. Position the specimen holder and lock the

handwheel of the microtome. Mount the tissue

block in the block holder as required.

Rationale: Locking the handwheel in the upper position

is to ensure safe specimen or blade exchanges, or any

position for safe specimen orientation.

all melted paraffin has been removed, dry slides

in a paraffin has been removed, dry slides in a

paraffin oven set at 45- 50

o C for 30 minutes. Mounting of serial

  1. Place mounted and dried specimen in a coplin jar sections on the surface

containing xylene indefinitely until ready for of the glass slide.

staining.

Rationale: Mounting of Tissue Sections are done to

preserve and support a stained section for light

microscopy. In addition, the glass slides help to protect Mounted and dried

the lens of the microscope in having contact with the specimen in a coplin jar

specimen. containing xylene.

D. THE H & E STAINING TECHNIQUE

H) STAINING

1. Preceding stains should be filtered to use.

✓ Filter stains prior to use. Clear the paraffin wax

using Xylene 3 times for 3-4 minutes.

Rationale: To avoid carry-over that may contaminate

the solutions leading to malign slide. Clearing removes

the hydrophobic property of the wax and make the

sample permeable to aqueous solutions.

✓ Rehydration using alcohol (isopropyl or ethanol)

3 times for 3-4 minutes and rinse with distilled

water for 1 minute.

Rationale: To remove the clearing solution which is

Xylene and for easy penetration of aqueous solutions.

2. Staining Process

✓ Stain with hematoxylin solution for 5,8, 10

minutes. Completely submerge the sections onto

the solutions when staining.

Rationale: To stain the nuclei and other basic

structures. For appropriate contrast of the nuclei.

Completely submerging the tissue create equal and fair

penetration of stain to tissue.

✓ Wash the slide with running tap water.

Rationale: Washing with tap water should be performed

in order to avoid contamination and let other deposits to

flow out with water.

✓ Stain with eosin solution for 3,5 minutes. Eosin

alcoholic solution can also be used after the

eosin solution for 30, 60, 90 seconds. Make sure

to cover all the solutions when staining.

Rationale: To stain the cytoplasm to differentiate it

from the nuclei. Covering the solutions avoids

evaporation of some solutions like alcohol and to avoid

exposure that may lead to unknown deposits.

3. Change the water regularly or use tap water

✓ Wash the slide.

Rationale: To remove excess stain from the slide.

Washing with tap water should be performed in order to

avoid contamination and let other deposits to flow out

with water.

✓ Dehydrate the slide in alcohol and clear with

Xylene.

✓ Cover the slide using embedding medium.

Rationale: To remove excess water and to make the

tissue completely transparent.

4. Monitor the slide under the microscope

✓ The slide is ready to be examined in the

microscope.

Rationale: In order to check and monitor if the nuclei

was stained properly and to assess the adequacy of

background stain. The cell nuclei should be color blue

while the cytoplasm should be color pink or red.

E. MOUNTING AND LABELING OF STAINED SECTIONS

I) MOUNTING

1. Take the slide from the xylene while wiping

off the sides of the smear with a gauze or

cotton swab and re-immerse it back into the

xylene solution.

Rationale: Wiping off the sides of the smear with

a gauze or cotton swab will remove the undesirable

sections from the smear.

2. Place slide on a flat surface covered by a clean

sheet of paper.

Rationale: This procedure is done to prepare the

smear for the mounting medium.

3. Put a drop of the mounting medium at the

central portion of the section to be mounted.

Rationale : The mounting medium needs to be at the

central portion of the section for the following procedure

to be done.

4. Lower one side of the cover glass onto the

surface of the section with the other side

following.

Rationale: Lowering one side of the cover glass onto

the surface will allow the mounting medium to be spread

evenly into the smear.

REFERENCES

(na).(2014). Histotechniques Mounting. Retrieved on May 01, 2020. Retrieved from

https://www.nationaldiagnostics.com/histology/article/mounting-tissue-sections

Bancroft, J., Layton, C., and Suvarna, K. (2019). Bancroft’s Theory and Practice of Histological Techniques: Tissue

Processing. Elsevier Limited. China

Cindy Sampias et al. (n.d). H&E Staining Overview: A Guide to Best Practices. Retrieved on May 14, 2020 from

https://www.leicabiosystems.com/knowledge-pathway/he-staining-overview-a-guide-to-best-practices/

Dey, P. (2018). Basic and Advanced laboratory Techniques in Histopathology and Cytology. Springer Nature Singapore

Pte Ltd. 152 Beach Road, #21-01/04 Gateway East, Singapore 189721, Singapore

Ellis, M., & Trengove, M. (2017 June 14). Leica RM2125 RTS & Olympus microTec CUT 4060 Written Instructions.

Retrieved on May 11, 2020, from

https://www.deakin.edu.au/__data/assets/pdf_file/0003/1037460/Microtome-Basic-Operation-and-Safety-

Procedures.pdf

Gregorios, J. (2017). Histopathologic Techniques. Jocelyn Bruce-Gregorios, M.D. U.S. Edition. Miami Florida

Hani A Alturkistani, Faris M Tashkandi, and Zuhair M Mohammedsaleh. (2014). Histological Stains: A Literature Review

and Case Study. Retrieved on May 01, 2020. Retrieved from

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4804027/

Jose, M. (2013). Quality and Safety Aspects in Histopathology Laboratory. Retrieved on May 5, 2020. Retrieved from:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927343/

Matenaers, C., Popper, B., Rieher, A., & Wanke, R. (2018 February 14 ). Practicable methods for histological section

thickness measurement in quantitative stereological analyses. Retrieved on May 11, 2020, from

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.

Pathology Associates of Saint Thomas. (2018). General terms. Retrieved on May 11,2020, from

http://pastnashville.com/general/terms.php

Tufts Medical Center. (2014 June 2). Animal Histology Core: How to fix and prepare tissue for Histology Submission.

Retrieved on May 12,2020, from http://sites.tufts.edu/histopath/files/2014/06/How-to-Prepare-Tissues-for-

Histology-Submission.pdf