Zoology Lecture Cell Structure and Function, Lecture notes of Zoology

Discusses the different microscopes, basic features of all cells, 2 types of cells, the different structures of the cell, endosymbiont theory, cell junctions, etc.

Typology: Lecture notes

2021/2022

Available from 07/10/2023

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The Cell Structure and Function
Cells
- All organisms are made up of cells
- Cells are the simplest collection of matter
that can be alive
- Cells can differ substantially from one
another yet they share common features
Microscope
- Used to visualize cells
- 3 important parameter of microscopy
Magnification
o Ratio of an object’s image size to
its real size
Resolution
o Measure of the clarity of the
image
Contrast
o Visible differences in brightness
between parts of the sample
Light microscope
- Visible light passes through a specimen
and then through the glass lenses
- Lenses refract the light -> image is
magnified
- Can magnify up to about 1000 times the
size of the actual specimen
Light microscope
- Brightfield
- Phase-contrast
- Differential-interference-contrast
- Florescence
- Confocal
- Deconvolution
- Super-resolution
Electron microscope
- Used to study subcellular structures
- 2 types
Scanning electron microscope
o Focus the beams of electrons on
the surface of specimen
o Provide 3D image
Transmission electron microscope
o Used to study the internal
structure of cells
Electron microscope
- Scanning
- Transmission
Cell fractionation
- Takes cells apart and separates the major
organelles from one another
- Enables scientists to determine the
function of each organelles
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The Cell Structure and Function

Cells

  • All organisms are made up of cells
  • Cells are the simplest collection of matter that can be alive
  • Cells can differ substantially from one another yet they share common features Microscope
  • Used to visualize cells
  • 3 important parameter of microscopy
  • Magnification o Ratio of an object’s image size to its real size
  • Resolution o Measure of the clarity of the image
  • Contrast o Visible differences in brightness between parts of the sample Light microscope
  • Visible light passes through a specimen and then through the glass lenses
  • Lenses refract the light - > image is magnified
  • Can magnify up to about 1000 times the size of the actual specimen Light microscope
  • Brightfield
  • Phase-contrast
  • Differential-interference-contrast
  • Florescence
  • Confocal
  • Deconvolution
  • Super-resolution Electron microscope
  • Used to study subcellular structures
  • 2 types
  • Scanning electron microscope o Focus the beams of electrons on the surface of specimen o Provide 3D image
  • Transmission electron microscope o Used to study the internal structure of cells Electron microscope
  • Scanning
  • Transmission Cell fractionation
  • Takes cells apart and separates the major organelles from one another
  • Enables scientists to determine the function of each organelles

Basic features of all cells

  • Plasma membrane
  • Semifluid substance
    • Cytosol o Chromosomes
    • Carry genes o Ribosomes
    • Make proteins 2 types of cells
  • Prokaryotic
  • Only organisms in domains bacteria and archaea
  • Eukaryotic
  • Fungi, animals, and plants Prokaryotic cells
  • No nucleus
  • Found in nucleoid
  • No membrane-bound organelles
  • Cytoplasm is bound by plasma membrane Eukaryotic cells
  • DNA is in a membranous nuclear envelope
  • With membrane-bound organelles
  • Cytoplasm is located in the region between plasma membrane and nucleus Plasma membrane
  • Selective barrier that allows sufficient passage of oxygen, nutrients, and waste to service the volume of every cell

Endoplasmic reticulum

  • Biosynthetic factory
  • Accounts for more than half of the total membrane in many eukaryotic cell
  • Continuous with nuclear envelope
  • 2 regions
    • Smooth ER o Lacks ribosomes
    • Rough ER o Surface is studded with ribosomes Smooth ER - Functions: - Synthesizes lipids - Metabolizes carbohydrates - Detoxifies drugs and poisons - Stores calcium ions Rough ER - Bound ribosomes secrete glycoproteins - Distributes transport vesicles - Secretory proteins surrounded by membranes - Membrane factory of the cell Golgi apparatus - Shipping and receiving center - Flattened membranous sacs - Cisternae - Functions: - Modifies products of the ER - Manufactures certain macromolecules - Sorts and packages materials into transport vesicles Lysosomes - Digestive compartments - Membranous sac of hydrolytic enzymes that can digest macromolecules
  • Lysosomal enzymes work best in the acidic environment inside the lysosomes
  • Hydrolytic enzymes and lysosomal membranes are made up by rough ER and transferred to the Golgi apparatus for further processing
  • Some types of cells can engulf by means of phagocytosis
  • Forms food vacuole
  • Lysosomes fuses with the food vacuole and digests the molecule
  • Also use enzymes to recycle the cell’s own organelles and macromolecules
  • Autophagy Vacuoles
  • Diverse maintenance compartments
  • Large vesicles derived from the ER and golgi apparatus
  • Perform a variety of functions in different kinds of cells
  • Food vacuole
  • Performed by phagocytosis
  • Contractile vacuole
  • Found in many freshwater protists
  • Pump excess water out of cells
  • Central vacuole
  • Found in many mature plant cells
  • Hold organic compounds and water Mitochondria & Chloroplast
  • They change energy from one form to another
  • Mitochondria
  • Cites of cellular respiration o Metabolic process that uses oxygen to generate ATP
  • Chloroplast
  • Sites of photosynthesis
  • Peroxisome
  • Oxidative organelles
  • Evolutionary origins of mitochondria and chloroplasts
  • They both have similarities with bacteria o Enveloped by a double membrane o Contain free ribosomes and circular DNA molecules o Grows and reproduce somewhat independently in cells
  • The similarities led to the endosymbiont theory Endosymbiont theory
  • Suggests that an early ancestor of eukaryotes engulfed an oxygen-using nonphotosynthetic prokaryotic cell
  • The engulfed cell formed a relationship with the host cell, becoming and endosymbiont
  • Evolved into mitochondria
  • At least one of these cells may have then taken up a photosynthetic prokaryote
  • Evolved into chloroplast

Cilia and flagella

  • Microtubule-containing extensions that project from some cells
  • Both differ in beating patterns
  • Common features:
    • Core of microtubules sheathed by the plasma membrane
    • Basal body that anchors the cilium or flagellum
    • Dynein o Motor protein o Drives the bending movement How dynein “walking” moves cilia and flagella?
  • Dynein arms alternately grab, move, and release the outer microtubules
  • Protein cross-links limit sliding
  • Forces exerted by dynein arms cause doublets to curve, bending the cilium or flagellum Microfilaments
  • Solid rods about 7nm in diameter, built as a twisted double chain of actin subunits
  • Structural roles of microfilaments is to bear tension, resisting pulling forces within the cell
  • Form a 3D network called the cortex just inside the plasma membrane to help support the cell’s shape
  • Bundles of microfilaments make up the core of microvilli of intestinal cells
  • Microfilaments that function in cellular motility contain the protein myosin in addition to actin
  • Localized contraction brought about by actin and myosin also drives amoeboid movement
  • Pseudopodia

Cytoplasmic streaming

  • Circular flow of cytoplasm within cells
  • This streaming speeds distribution of materials within the cells Intermediate filaments
  • Range in diameter from 8-12nm
  • Larger than microfilaments but smaller than microtubules
  • Support cell shape and fix organelles in place
  • More permanent cytoskeleton fixtures than the other two classes Extracellular matrix
  • Animal cells lack cell walls but are covered by an elaborate ECM
  • Made up of glycoproteins (collagen, proteoglycans, fibronectin) Integrins
  • ECM proteins that bind to receptor proteins in plasma membrane
  • ECM can regulate a cell’s behavior by communicating with a cell through integrins
  • The ECM around a cell can influence the activity of gene in the nucleus
  • Mechanical signaling may occur through cytoskeletal changes, that trigger chemical signals in the cell Cell junctions
  • Neighboring cells in tissues, organs, or organ systems often adhere, interact, and communicate through direct physical contact
  • 3 types common in the epithelial tissues:
  • Tight junction
  • Desmosomes
  • Gap junction Tight junction
  • Membrane of neighboring cells are pressed together
  • Preventing leakage of ECF Desmosomes
  • Anchoring junction
  • Fasten cells together into strong sheets Gap junction
  • Communicating junctions
  • Provide cytoplasmic channels between adjacent cells