A technical mandatory SIWES report, Study Guides, Projects, Research of Reporting and Production

Needed for student to gain experience and knowledge of their field work

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2025/2026

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TECHNICAL REPORT
ON
SIWES (STUDENT INDUSTRIAL WORK EXPERIENCE SCHEME)
AT OLUFUNMI HOSPITAL ASERO ESTATE, ABEOKUTA, OGUN STATE, NIGERIA.
PERPARED BY
MOMOH OGERE TOFUNMI (20/05NSS018)
SUBMITTED TO
THE DEPARTMENT OF BIOLOGICAL SCIENCE, FACULTY OF COMPUTING AND
APPLIED SCIENCE,THOMAS ADEWUNMI UNIVERSITY OKO, KWARA STATE,
NIGERIA.
IN PARTIAL FULFILMENT TO REQUIREMENTS FOR THE AWARD OF BSC.
DEGREE IN MICROBIOLGY.
JANUARY 15,2025
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I

A

TECHNICAL REPORT

ON

SIWES (STUDENT INDUSTRIAL WORK EXPERIENCE SCHEME)

AT OLUFUNMI HOSPITAL ASERO ESTATE, ABEOKUTA, OGUN STATE, NIGERIA.

PERPARED BY

MOMOH OGERE TOFUNMI ( 20 /05NSS018)

SUBMITTED TO

THE DEPARTMENT OF BIOLOGICAL SCIENCE, FACULTY OF COMPUTING AND

APPLIED SCIENCE,THOMAS ADEWUNMI UNIVERSITY OKO, KWARA STATE,

NIGERIA.

IN PARTIAL FULFILMENT TO REQUIREMENTS FOR THE AWARD OF BSC.

DEGREE IN MICROBIOLGY.

JANUARY 15,

II

CERTIFICATION

This is to certify that the work during the three months industrial training was carried out by Momoh Ogere Tofunmi at Olufunmi Hospital Asero estate Abeokuta, Ogun State, under the supervision of Mrs Olaitan, with the report presented to the department of Biological Science, Faculty of Computing and Applied Science, Thomas Adewumi University Oko, Kwara state, Nigeria, during the 2024 /202 5 Students Industrial Work Experience Scheme (SIWES). DR. AYENI _________________ SIWES CORDINATOR Signature & Date DR. S.O FAROHUNBI _________________ H.O.D Signature & Date

IV

ACKNOWLEDGEMENT

I'm grateful to Olufunmi Hospital for the invaluable industrial training experience in the laboratory.Special thanks to my H.O.D DR. Farohunbi, supervisor Mrs Olaitan, and my lecturers for their guidance and support. The challenging tasks deepened my industry knowledge. The whole members of staff in OLufunmi Hospital team's cooperation enriched my training. Thanks to colleagues for camaraderie and knowledge sharing. This experience equips me for a successful career in microbiolgy.

V

TABLE OF CONTENTS

Title page -------------------------------------------------------------------------------------------------- i Certification ----------------------------------------------------------------------------------------------- ii Dedication------------------------------------------------------------------------------------------------- iii Acknowledgement---------------------------------------------------------------------------------------- iv Table of content ------------------------------------------------------------------------------------------ v CHAPTER ONE 1.1 Historical Background of SIWES --------------------------------------------------------------- 1- 1.2 Objectives of SIWES ----------------------------------------------------------------------------- 2 1.3 History and background Olufunmi Hospital ---------------------------------------------------2- 3 CHAPTER TWO 2.1 Introduction to the laboratory - -------------------------------------------------------------------- 4 2.2 Rules and regulations of the laboratory --------------------------------------------------------- 4 2.3Material and equipment used in the laboratory and their uses ------------------------------- 4- CHAPTER THREE

  1. 1 Tests carried out in the laboratory and RDTs------------------------------------------------ 40-
  2. 2 Full blood count tests -------------------------------------------------------------------------- 43- 3.3 Types of blood group and genotype----------------------------------------------------------- CHAPTER 4 4.1 Challenges encountered ------------------------------------------------------------------------ 47 4.2 Conclusion ---------------------------------------------------------------------------------------- 47 4.3 Recommendation -------------------------------------------------------------------------------- 47 4.4 References ---------------------------------------------------------------------------------------- 48-

done at the end of second semester of year two usually from September to December while that of degree programme is 6 months done at the end of first semester of year three usually from May to October.

1.2 Objectives of SIWES

Objectives of the Programme

The specific objectives of SIWES are to:  Provide placements in industries for students of higher institutions of learning approved by relevant regulatory authorities (NUC, NBTE, NCCE) to acquire work experience and skills relevant to their course of study  Prepare students for real work situation they will meet after graduation.  Expose students to work methods and techniques in the handling of equipment and machinery that may not be available in schools.  Make transition from school to the labour market smooth and enhance students’ conduct for later job placement  Provide students with the opportunity to apply their knowledge in real life work situation thereby bridging the gap between theory and practice  Strengthen employer involvement in the entire educational process and prepare students for employment in industry  Promote the desired technological knowhow required for the advancement of the nation.

1.3 History and background Olufunmi Hospital

Olufunmi hospital 10 th^ April 2010, founded by Dr. And Dr. Mrs Olufunmi, Licensed hospital by the Nigeria Ministry of Health, with facility code 27/02/1/2/2/0011 and registered as Secondary Health Care

Centre.Olufunmi hospital is not just good a hospital with courteous staff, it is a place where your problems can be solved by seasoned professionals.

 Red Top Tube (No Additive or Clot Activator): Used for serum tests, such as chemistry, serology, and blood bank.  Purple/Lavender Top Tube (EDTA): Used for hematology tests like complete blood count (CBC), blood smears, and molecular diagnostic tests.  Blue Top Tube (Sodium Citrate): Typically used for coagulation studies, such as prothrombin time (PT) and activated partial thromboplastin time (aPTT).  Green Top Tube (Heparin): Commonly used for plasma determinations in chemistry.  Yellow Top Tube (ACD or SST): Used for genetic studies, tissue typing, and certain specialized tests. SST (serum-separating tube) tubes contain a gel that separates serum from blood cells after centrifugation.  Gray Top Tube (Sodium Fluoride/Potassium Oxalate): Primarily used for glucose testing and blood alcohol levels. Fig1.1-picture of sample bottles

- Syringes and Needles: For drawing blood or other fluids from patients,syringes and needles play crucial roles in collecting and processing blood samples, injecting reagents or medications, and handling fluids in various laboratory procedures. The usage of syringes and needles in the lab focuses on precision, safety, and sterility to ensure accurate results and prevent contamination or injury. Common Uses of Syringes and Needles in Medical Laboratories:

 Blood Collection:Blood collected via syringe is transferred into blood collection tubes (such as EDTA, citrate, or serum-separating tubes) for subsequent analysis in hematology, chemistry, or microbiology.  Venipuncture: Syringes and needles are often used to draw blood directly from a vein. In some cases, instead of vacuum tubes (used with a butterfly needle), a syringe may be preferred to control the flow and prevent the collapse of small or delicate veins.  Sample Transfer:Syringes are used to transfer fluids (such as plasma, serum, or other biological fluids) between containers, such as from test tubes to vials, without contaminating the sample.Needles attached to syringes may be used to aspirate specific quantities of liquid from sealed containers, ensuring sterility and avoiding exposure to air.  Centrifuge Tubes and Fluid Handling:After centrifugation, syringes are used to carefully withdraw layers of plasma, serum, or other components from blood samples for further testing.This precise handling helps prevent contamination of the sample with other layers (e.g., blood cells or clots) and ensures accurate lab results.  Inoculation of Culture Media:In microbiology, needles attached to syringes are sometimes used to inoculate culture media with specific volumes of fluids containing microorganisms, particularly in anaerobic culture techniques where the media is sealed.This prevents contamination and ensures that the specimen reaches the correct medium for growing and identifying pathogens. Single-Use Policy: In medical laboratories, syringes and needles are typically single-use to prevent contamination between samples, reduce infection risk, and maintain sterility in the lab. Fig 1.2- needle and syringe

 Cervical Swabs (for HPV/Pap Tests):Swabs can also be used to collect samples from the cervix for tests such as Pap smears (to detect abnormal cells) and HPV (human papillomavirus) testing.These swabs are often part of liquid-based cytology kits, which allow cells to be suspended in a liquid medium for examination. Types of Swabs Commonly Used in Medical Laboratories:  Nasopharyngeal Swabs:Long, flexible swabs with soft tips used for collecting samples from the back of the nose or throat. These are widely used in testing for respiratory pathogens, including COVID-19 and influenza.These swabs are typically placed into viral transport media for molecular and culture testing.  Throat Swabs:Shorter swabs with cotton or synthetic tips used to collect specimens from the throat, often for diagnosing bacterial infections such as strep throat.  Buccal Swabs:Soft-tipped swabs used to collect cells from the inside of the cheek for DNA extraction. Often used in genetic or forensic testing.  Sterile Cotton or Rayon Swabs:Used for general bacterial culture collection from wounds, skin lesions, and mucous membranes.Placed into transport media to preserve the sample for bacterial or fungal identification.  Flocked Swabs:These swabs have a nylon or polyester tip with a flocked (brush-like) surface, designed to improve sample collection and release. Flocked swabs are commonly used in molecular testing, such as PCR, due to their high efficiency in collecting and releasing cells or viruses into the transport medium.  Calcium Alginate Swabs:Often used in viral and bacterial culture collections, particularly in sensitive areas like the nasopharynx or wound sites. The swab’s material dissolves upon exposure to certain body fluids, reducing contamination risk. Storage Conditions: Samples collected on swabs must be stored and transported to the lab under specific conditions (e.g., refrigerated or at room temperature) to preserve the sample's integrity until testing.

Fig 1.3- Swab stick.

- Urine and Stool Containers: Sterile urine and stool containers are essential tools for collecting and storing patient samples for diagnostic testing. These containers are designed to ensure safe, clean, and sterile collection, transportation, and storage of samples while preserving the integrity of the specimen for accurate laboratory analysis. Urine Containers in Medical Laboratories Urine containers are used to collect and transport urine samples for various types of diagnostic tests, such as urinalysis, culture, and drug testing.

  1. Types of Urine Containers:  Sterile Urine Containers:Used for routine urinalysis, urine cultures, and other microbiological tests.Sterile containers are essential to avoid contamination that could affect test results, particularly in cultures where bacteria may be present.Usually, these are 100- mL clear plastic containers with a wide screw-top lid for easy collection.May come with labels for patient information and a biohazard symbol for safe transport.  24-Hour Urine Collection Containers:Large-capacity containers (usually around 2-3 liters) designed for collecting all urine excreted by a patient over 24 hours. This is done to measure substances like creatinine, protein, or hormones over a full day.These containers often have additives, such as acids, to preserve the urine and prevent degradation of specific compounds.Typically made of plastic and feature a wide opening for easy collection and a secure lid for transport.

 Stool Collection Cups/Containers:These are typically wide-mouthed, sterile plastic containers with screw-top lids.Containers often come with a small spoon or spatula attached to the lid to help patients collect the sample hygienically.Stool containers are used for tests like stool culture, parasite examination, and fecal occult blood testing.  Stool Transport Media Containers:For certain tests, such as those detecting parasites or bacterial infections, stool samples are placed into containers with a specialized transport medium, such as Cary-Blair medium.These preservatives stabilize the specimen during transport to the laboratory, ensuring the integrity of the sample for testing.  Faecal Occult Blood Test (FOBT) Cards/Containers:This is used to detect hidden blood in the stool, which can be a sign of gastrointestinal bleeding or colorectal cancer.Patients place small stool samples on special cards or in small containers for testing in the laboratory.

  1. Stool Sample Handling:  Collection: Patients are instructed to collect a small portion of stool, usually about 2-5 grams (a teaspoon-sized amount), using a spatula or spoon included with the container.  Transport: Stool samples should be transported to the laboratory as soon as possible to ensure accurate testing. For some tests, the stool sample can be refrigerated or kept at room temperature based on the test requirements.  Labelling: Like urine containers, stool containers must be labeled correctly with patient details, collection date, and time for proper identification in the lab.
  2. Common Stool Tests in Medical Laboratories:  Stool Culture: Used to identify bacteria, viruses, or fungi in the gastrointestinal tract, such as Salmonella, E. coli, or Clostridium difficile.  Parasite Exam (Ova and Parasites): Examines stool for the presence of parasitic eggs or larvae to diagnose infections like Giardia or Entamoeba.  Faecal Occult Blood Test (FOBT): Screens for hidden blood in the stool, a potential indicator of colorectal cancer or other gastrointestinal disorders.  Faecal Calprotectin: Measures levels of calprotectin in stool, often used to diagnose and monitor inflammatory bowel diseases (IBD) like Crohn's disease or ulcerative colitis. Best Practices for Using Urine and Stool Containers in Medical Laboratories:

 Patient Instructions:Patients must be given clear instructions on how to collect and handle their samples to avoid contamination or improper collection.This includes using the provided collection tools (e.g., spoons for stool samples) and properly sealing the containers after collection.  Sterility:Sterile containers are critical to preventing contamination of urine or stool samples that could interfere with diagnostic results.Laboratories ensure that all containers are pre- packaged in sterile packaging and stored under appropriate conditions.  Transport and Storage:Urine and stool samples should be transported to the lab quickly to preserve the integrity of the specimen. Some samples require refrigeration, while others may need to be kept at room temperature. Laboratory staff must ensure proper storage of samples until testing is completed. Disposal:After testing, urine and stool samples must be disposed of according to biohazard waste disposal protocols to prevent contamination and spread of pathogens. Fig 1.4- urine and stool container.

  • Slides and Cover Slips: slides and cover slips are critical tools used for the microscopic examination of cells, tissues, and microorganisms. They play a vital role in pathology, microbiology, hematology, and cytology, enabling the visual analysis of specimens for diagnostic purposes. Slides in Medical Laboratories Slides are thin, rectangular pieces of glass or plastic used to hold specimens for microscopic examination. The specimens are placed on the slide and often stained or fixed to enhance visualization.

blood cells, white blood cells, and platelets) and assess for conditions like anemia, leukemia, or infections.Special stains, such as Wright's stain or Giemsa stain, are applied to enhance the visibility of different blood cell components.  Microbiology:Slides are used to examine bacteria, fungi, and other microorganisms under the microscope, typically after staining with techniques such as Gram staining or acid-fast staining.Microbiology slides are used to diagnose infections and identify the causative organisms.

  1. Preparation and Staining:  Fixation: Many slides, especially those used in histology or cytology, require the sample to be fixed using chemical fixatives (like formalin or methanol) to preserve the tissue or cells and prevent degradation before staining.  Staining: To enhance visualization, biological samples are stained with dyes or special stains. For example:  Hematoxylin and Eosin (H&E): Used in histology to stain tissue sections for routine examination.  Gram Stain: Used in microbiology to classify bacteria as Gram-positive or Gram-negative based on cell wall properties. Cover Slips in Medical Laboratories Cover slips are small, thin, square, or rectangular pieces of glass or plastic used to cover the specimen on the slide. They protect the sample, improve image clarity, and prevent contamination during microscopic examination.
  2. Types of Cover Slips:  Glass Cover Slips:The most commonly used type, typically made of thin glass with thickness ranging from 0.13 to 0.17 mm.They are available in various sizes, with 22 x 22 mm or 24 x 50 mm being common dimensions. Glass cover slips are preferred for high-magnification work due to their optical clarity and flatness.

 Plastic Cover Slips:These are used in environments where glass breakage may be a concern. However, they are less optically clear than glass and may not be suitable for high-resolution microscopy. Plastic cover slips are often used for temporary wet mounts, where long-term sample preservation is not required.

  1. Uses of Cover Slips in Medical Laboratories:  Protecting the Specimen:Cover slips are placed on top of the specimen to protect it from dust, air exposure, or drying during microscopic examination.They also ensure that the sample remains flat and secure on the slide, preventing movement or distortion.  Enhancing Image Clarity:A cover slip helps improve the optical properties of the sample by creating a uniform refractive index between the specimen and the microscope lens.This improves the sharpness and resolution of the image, especially in high-power microscopy.  Preventing Contamination:By covering the specimen, cover slips protect the sample from external contaminants, such as dust or debris, that could interfere with the accuracy of the microscopic analysis.  Oil Immersion:For oil immersion microscopy, which is commonly used in microbiology and hematology to achieve high magnifications (e.g., 1000x), cover slips are essential. The oil is placed between the cover slip and the objective lens to enhance image clarity by reducing light refraction. Slide and Cover Slip Preparation:  Sample Placement:The specimen (cells, tissue sections, or microorganisms) is placed directly onto the slide. Depending on the type of sample, it may be smeared (for blood), sliced (for tissue), or spread out (for fluids or cultures).  Cover Slip Application:A cover slip is gently placed over the specimen using tweezers or forceps, often with a small amount of liquid medium (e.g., mounting medium or water) between the sample and the cover slip.The cover slip is pressed down carefully to avoid trapping air bubbles, which can obscure the view under the microscope.  Mounting Medium:In some cases, especially for long-term storage of slides (e.g., histological slides), a mounting medium is applied between the sample and the cover slip to preserve the specimen and prevent it from drying out.Mounting media can be water-based or resin-based, depending on the type of stain and the longevity of the preparation.