biosensors and MEMS paper, Exams of Biotechnology

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Reg. No.:
Name :
Mid Term Examinations- December 2020
Programme
:
Semester
:
Interim 2020-2021
Course
:
Code
:
BIO3015
Faculty
:
Slot/Class No.
:
D11 /1080
Time
:
Max. Marks
:
50
Answer all the Questions
Q. No.
Question Description
Marks
1
Dexter is planning to work on the development of biosensors for detection of E.coli bacteria in
water samples (let’s assume RI of water samples = 1.33). In his lab he has bacteriophages,
antibodies, and aptamers, all of these are specific to E.coli bacteria and can be used as bio-
receptors. In addition to this, he also has optical fibres, UV source (40-400 nm) and a
spectrometer. According to you, which bio-receptor among the ones available in his lab he
should use and why? Also, identify the transduction principle involved in carrying out the
detection and explain it with a neat diagram and necessary equations.
10
2
Consider the following situations and propose a suitable bio-receptor to be used in the
biosensor. Briefly, justify your answer.
a. Oswald with Madame Butterfly, and his other friends is residing in the Big City. Due
to a newly setup battery manufacturing plant besides the river flowing through their
city, the water quality is deteriorating. Oswald believes that the industrial waste is being
discharged into the river water. To ascertain this, he plans to use a biosensor for
checking the water quality. Identify the bio-receptor that Oswald can use to check the
presence/absence of toxins like heavy metal ions in water. Justify your answer.
b. Dr. Tony Stark has a fully furnished laboratory. He plans to develop a biosensor for
detection of estrogen. He has a fluorophore and a quencher combination in his lab. But,
he is confused between the different bio-receptors: aptamers, MIPs and aequorin
molecules. Propose a suitable bio-receptor that can be tagged with a fluorophore and
quencher and can in turn be used for the detection of estrogen? Justify your answer.
c. Gaara reports symptoms such as vomiting, dehydration, diarrhea, etc. to Dr. Sakura. Dr.
Sakura is a biosensors scientist and a renowned physician. He is planning to develop a
biosensor for detection of the causative organism. Identify the causative organism here
and suggest a suitable receptor that Dr. Sakura can use in the present context? Justify
your answer
10
3
Joey and Chandler are introduced to a new and interesting course, “Biosensors and MEMS”.
As a part of this course, they should be briefed about “biochips” and “biosensors”. Imagine
yourself as their instructor and point out the differences between biochips and biosensors to
them. (Any 2 differences)
In the MEMS section, you plan to teach them about the scaling laws. Explain what are scaling
laws to the students and using a suitable example (of a cube) prove to them how surface area
to volume ratio changes with the size of an object.
10
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Page 1 of 2 Reg. No.: Name : Mid Term Examinations- December 2020 Programme : B.Tech – Bioengineering Semester : Interim 2020 - 2021 Course : (^) Biosensors and MEMS Code : (^) BIO Faculty : Dr. Pallavi Dnyandeo Halkare Slot/Class No. : D11 / Time : 1½ hours Max. Marks : 50 Answer all the Questions Q. No. Question Description Marks 1 Dexter is planning to work on^ the^ development of biosensors^ for detection of^ E.coli^ bacteria in water samples (let’s assume RI of water samples = 1.33). In his lab he has bacteriophages, antibodies, and aptamers, all of these are specific to E.coli bacteria and can be used as bio- receptors. In addition to this, he also has optical fibres, UV source (40-400 nm) and a spectrometer. According to you, which bio-receptor among the ones available in his lab he should use and why? Also, identify the transduction principle involved in carrying out the detection and explain it with a neat diagram and necessary equations.

2 Consider the following situations and propose a suitable bio-receptor to be used in the biosensor. Briefly, justify your answer. a. Oswald with Madame Butterfly, and his other friends is residing in the Big City. Due to a newly setup battery manufacturing plant besides the river flowing through their city, the water quality is deteriorating. Oswald believes that the industrial waste is being discharged into the river water. To ascertain this, he plans to use a biosensor for checking the water quality. Identify the bio-receptor that Oswald can use to check the presence/absence of toxins like heavy metal ions in water. Justify your answer. b. Dr. Tony Stark has a fully furnished laboratory. He plans to develop a biosensor for detection of estrogen. He has a fluorophore and a quencher combination in his lab. But, he is confused between the different bio-receptors: aptamers, MIPs and aequorin molecules. Propose a suitable bio-receptor that can be tagged with a fluorophore and quencher and can in turn be used for the detection of estrogen? Justify your answer. c. Gaara reports symptoms such as vomiting, dehydration, diarrhea, etc. to Dr. Sakura. Dr. Sakura is a biosensors scientist and a renowned physician. He is planning to develop a biosensor for detection of the causative organism. Identify the causative organism here and suggest a suitable receptor that Dr. Sakura can use in the present context? Justify your answer

3 Joey and Chandler are introduced to^ a new and interesting course, “Biosensors and MEMS”. As a part of this course, they should be briefed about “biochips” and “biosensors”. Imagine yourself as their instructor and point out the differences between biochips and biosensors to them. (Any 2 differences) In the MEMS section, you plan to teach them about the scaling laws. Explain what are scaling laws to the students and using a suitable example (of a cube) prove to them how surface area to volume ratio changes with the size of an object.

Page 2 of 2 4 Imagine yourself as one of the top officials in FDA (Food and^ Drug Administration Department). Harry, your close friend has developed a biosensor for detecting glucose in blood. He approaches you with his sensor and expresses his desire to commercialize it. Can he commercialize the biosensor without FDA approval? Explain the different parameters that you (FDA) will assess before giving him the approval.

5 Nobita^ is working as an intern in^ your “Biosensors” lab and^ is^ extremely confused between labelled and label free biosensors. Explain the differences between labelled and label free biosensors to him. (minimum of 3 differences) He is also planning to work on surface plasmon resonance (SPR) sensors as a part of his internship project. But wants more clarity on differences between SPR and LSPR (localized surface plasmon resonance) based transduction principles. Explain the differences between SPR and LSPR based sensors to him with neat diagrams. (minimum of 4 differences)