Designer genes cheat sheet, Cheat Sheet of Environmental science

This cheat sheets contains all the facts you need to know about designer genes

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2025/2026

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Part 1: The Basics of Heredity (Classical Genetics)
To understand genetics, you must first learn the "language" of inheritance.
1. Key Terminology
โ— Gene: The fundamental unit of inheritance responsible for a specific trait.
โ— Allele: Alternate forms of a single gene (e.g., a gene for height might have "tall" and "short" alleles).
โ— Genotype: The actual genetic makeup (the letters, like Tt ).
โ— Phenotype: The physical expression of those genes (the appearance, like "Tall").
โ— Homozygous: Having two of the same alleles (e.g., TT or tt ).
โ— Heterozygous: Having two different alleles (e.g., Tt ).
โ— Dominant: An allele that is expressed even if only one copy is present (represented by capital letters).
โ— Recessive: An allele that is only expressed when the dominant allele is absent (represented by lowercase letters).
2. Mendelโ€™s Laws
Gregor Mendel, the "Father of Genetics," established three core principles through his work with pea plants:
1. Law of Segregation: During gamete formation, the two alleles for a trait separate so that each gamete receives only one.
2. Law of Independent Assortment: Genes for different traits are sorted into gametes independently of one another (this only
applies if they are on different chromosomes).
3. Law of Dominance: One allele can mask the expression of another.
3. Solving Genetic Crosses (Punnett Squares)
Punnett squares are diagrams used to predict the probability of an offspring's genotype.
โ— Monohybrid Cross: A cross involving one trait (e.g., Aa x Aa ).
โ—‹ Phenotype Ratio: Usually 3:1.
โ—‹ Genotype Ratio: Usually 1:2:1.
โ— Dihybrid Cross: A cross involving two traits (e.g., AaBb x AaBb ).
โ—‹ Phenotype Ratio: 9:3:3:1.
Part 2: Molecular Genetics
This section focuses on how DNA actually works at a chemical level.
1. The Central Dogma
The flow of genetic information in a cell follows this path: DNA โ†’ RNA โ†’ Protein.
โ— Replication: DNA makes a copy of itself.
โ— Transcription: DNA is used as a template to create Messenger RNA (mRNA) in the nucleus.
โ— Translation: mRNA is "read" by ribosomes in the cytoplasm to build a protein chain using Transfer RNA (tRNA) to bring
amino acids.
2. DNA Structure
โ— Components: DNA is a double helix made of nucleotides.
โ— Nucleotide: Consists of a deoxyribose sugar, a phosphate group, and a nitrogenous base.
โ— Base Pairing: Adenine (A) pairs with Thymine (T), and Guanine (G) pairs with Cytosine (C).
โ— Directionality: DNA strands are antiparallel, running in 5' to 3' and 3' to 5' directions.
3. DNA Replication Enzymes
โ— Helicase: Unwinds and "unzips" the DNA double helix.
โ— DNA Polymerase III: Assembles new DNA strands in the 5' to 3' direction.
โ— Ligase: Joins DNA fragments (Okazaki fragments) on the lagging strand.
Part 3: Gene Regulation and Mutations
Cells do not express all genes at once; they use "switches" to control them.
1. Prokaryotic Regulation (Operons)
โ— Lac Operon: A system in E. coli that controls the breakdown of lactose.
โ—‹ Promoter: Where RNA polymerase binds to start transcription.
โ—‹ Operator: The "on/off switch" where a repressor protein can bind.
โ— Polycistronic mRNA: In prokaryotes, one mRNA molecule can code for multiple different proteins.
2. Eukaryotic Differences
โ— RNA Processing: Unlike prokaryotes, eukaryotic mRNA is modified before leaving the nucleus. This includes adding a 5โ€™ cap,
a poly-A tail, and splicing (removing non-coding introns).
โ— Monocistronic: Eukaryotic mRNA typically codes for only one protein.
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Part 1: The Basics of Heredity (Classical Genetics) To understand genetics, you must first learn the "language" of inheritance.

1. Key Terminology โ— Gene: The fundamental unit of inheritance responsible for a specific trait. โ— Allele: Alternate forms of a single gene (e.g., a gene for height might have "tall" and "short" alleles). โ— Genotype: The actual genetic makeup (the letters, like Tt ). โ— Phenotype: The physical expression of those genes (the appearance, like "Tall"). โ— Homozygous: Having two of the same alleles (e.g., TT or tt ). โ— Heterozygous: Having two different alleles (e.g., Tt ). โ— Dominant: An allele that is expressed even if only one copy is present (represented by capital letters). โ— **Recessive: An allele that is only expressed when the dominant allele is absent (represented by lowercase letters).

  1. Mendelโ€™s Laws Gregor Mendel, the "Father of Genetics," established three core principles through his work with pea plants:**
    1. Law of Segregation: During gamete formation, the two alleles for a trait separate so that each gamete receives only one.
    2. Law of Independent Assortment: Genes for different traits are sorted into gametes independently of one another (this only applies if they are on different chromosomes).
    3. **Law of Dominance: One allele can mask the expression of another.
  2. Solving Genetic Crosses (Punnett Squares) Punnett squares are diagrams used to predict the probability of an offspring's genotype.** โ— Monohybrid Cross: A cross involving one trait (e.g., Aa x Aa ). โ—‹ Phenotype Ratio: Usually 3:1. โ—‹ Genotype Ratio: Usually 1:2:1. โ— Dihybrid Cross: A cross involving two traits (e.g., AaBb x AaBb ). โ—‹ **Phenotype Ratio: 9:3:3:1. Part 2: Molecular Genetics This section focuses on how DNA actually works at a chemical level.
  3. The Central Dogma The flow of genetic information in a cell follows this path: DNA โ†’ RNA โ†’ Protein.** โ— Replication: DNA makes a copy of itself. โ— Transcription: DNA is used as a template to create Messenger RNA (mRNA) in the nucleus. โ— Translation: mRNA is "read" by ribosomes in the cytoplasm to build a protein chain using Transfer RNA (tRNA) to bring **amino acids.
  4. DNA Structure** โ— Components: DNA is a double helix made of nucleotides. โ— Nucleotide: Consists of a deoxyribose sugar, a phosphate group, and a nitrogenous base. โ— Base Pairing: Adenine (A) pairs with Thymine (T), and Guanine (G) pairs with Cytosine (C). โ— **Directionality: DNA strands are antiparallel, running in 5' to 3' and 3' to 5' directions.
  5. DNA Replication Enzymes** โ— Helicase: Unwinds and "unzips" the DNA double helix. โ— DNA Polymerase III: Assembles new DNA strands in the 5' to 3' direction. โ— **Ligase: Joins DNA fragments (Okazaki fragments) on the lagging strand. Part 3: Gene Regulation and Mutations Cells do not express all genes at once; they use "switches" to control them.
  6. Prokaryotic Regulation (Operons)** โ— Lac Operon: A system in E. coli that controls the breakdown of lactose. โ—‹ Promoter: Where RNA polymerase binds to start transcription. โ—‹ Operator: The "on/off switch" where a repressor protein can bind. โ— **Polycistronic mRNA: In prokaryotes, one mRNA molecule can code for multiple different proteins.
  7. Eukaryotic Differences** โ— RNA Processing: Unlike prokaryotes, eukaryotic mRNA is modified before leaving the nucleus. This includes adding a 5โ€™ cap, a poly-A tail, and splicing (removing non-coding introns). โ— Monocistronic: Eukaryotic mRNA typically codes for only one protein.

**3. Mutations Mutations are changes in the DNA sequence; Spontaneous: Errors during replication; Induced: Caused by environmental factors like UV light or chemicals. Part 4: Advanced Topics & Biotechnology These topics are frequent in Division C (High School) competitions.

  1. Biotechnology Techniques** โ— PCR (Polymerase Chain Reaction): A method to rapidly "amplify" (copy) specific DNA sequences. โ— Sanger Sequencing: A technique used to determine the exact order of nucleotides in a DNA molecule. โ— CRISPR-Cas9: A modern tool for precise gene editing. โ— **Restriction Enzymes: Proteins that cut DNA at specific sequences, used to create recombinant DNA.
  2. Non-Mendelian Inheritance** โ— Sex-Linked Traits: Genes located on the X or Y chromosomes (e.g., colorblindness). โ— Multiple Alleles: When more than two alleles exist for a gene (e.g., ABO Blood Groups). โ— Cytoplasmic Inheritance: Traits inherited through organelles like mitochondria or chloroplasts rather than the nucleus. โ— Polygenic Traits: Traits controlled by many genes, leading to continuous variation (e.g., human height or skin color). โ— Pedigree Clues: โ—‹ Autosomal Dominant: Appears in every generation; affected parents can have unaffected kids. โ—‹ Autosomal Recessive: Skips generations; unaffected parents can have affected kids. โ—‹ X-Linked Recessive: More males affected; affected fathers pass to all daughters (carriers) but no sons. โ—‹ Cytoplasmic (Mitochondrial): Passed ONLY from mother to ALL children. II. EVOLUTIONARY GENETICS (The Math) โ— Hardy-Weinberg Equilibrium (HWE): โ—‹ Allele Frequency: $p + q = 1$ โ—‹ Genotype Frequency: $p^2 + 2pq + q^2 = 1$ โ—‹ HWE Conditions: Large population, no mutation, no migration, random mating, no selection. โ— Genetic Drift: Random changes in allele frequency; strongest in small populations. โ—‹ Bottleneck: Sharp reduction in size. โ—‹ Founder Effect: Small group starts a new colony. โ— Homologs: โ—‹ Orthologs: Speciation (same gene, different species). โ—‹ Paralogs: Gene duplication within a species. III. MOLECULAR BIOLOGY (DNA/RNA) โ— Replication Enzymes: โ—‹ Helicase: Unzips helix. Topoisomerase: Relieves supercoiling. โ—‹ Primase: Adds RNA primer. DNA Pol III: Main builder ($5' \rightarrow 3'$). โ—‹ Ligase: Glues Okazaki fragments. โ— Mutations: โ—‹ Silent: No amino acid change. Missense: One amino acid changes. โ—‹ Nonsense: Early stop codon. Frameshift: Insertion/Deletion shifts reading frame. Page 2: Regulation, Biotechnology, and Laboratory Analysis IV. GENE REGULATION (Prokaryote vs. Eukaryote) โ— Prokaryotic Operons: โ—‹ Lac Operon (Inducible): Usually "off"; turned "on" by lactose. Repressor binds Operator to block RNA Pol. โ—‹ Trp Operon (Repressible): Usually "on"; turned "off" when tryptophan levels are high. โ— Eukaryotic Regulation: โ—‹ Transcription Factors: Help RNA Polymerase bind to the promoter. โ—‹ Enhancers/Silencers: Distant DNA regions that increase or decrease transcription. โ—‹ Histone Acetylation: Loosens chromatin $\rightarrow$ Enhances transcription. โ—‹ DNA Methylation: Tends to silence genes.