Factors Affecting Enzyme Activity: A Comprehensive Guide with Practice Questions, Exams of Biochemistry

Since enzymes catalyse reactions by randomly colliding with Substrate molecules, increasing temperature increases the rate of reaction, forming more product. •.

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BioFactsheet
April 1999Number 43
1
Factors Affecting Enzyme Activity
Enzymes are globular proteins which act as biological catalysts. This means
that they speed up the rate of reaction by lowering the activation energy,
that is the energy required to break bonds. Enzymes are a complex tertiary
and sometimes quaternary shape and catalyse reactions by forming a
complex (known as the enzyme substrate complex) at a specific region of
the enzyme called the active site.
Enzyme + substrate à enzyme substrate complex à product
Enzymes are specific; any individual enzyme can usually only catalyse
one particular reaction. The induced fit hypothesis has been put forward
to explain how enzymes work. The key points of the induced fit hypothesis
are as follows (Fig1):
The effect of temperature on the rate of a chemical reaction is described by
the term “temperature coefficient” (Q10).
Q10 = rate of reaction at T + 10oC
rate of reaction at ToC
Many enzymes have a Q10 of between 2 and 3. In other words, provided
that the temperature is not so high that it causes denaturation, an increase
in temperature of 10oC will speed up the reaction by a factor of 2-3, that is
it will double or treble it (Fig 2).
2. pH
The effect of a change in pH on enzyme activity is shown in Fig 3. As with
temperature, each enzyme has an optimum pH. If pH increases or decreases
much beyond this optimum, the ionisation of groups at the active site and
on the substrate may change, effectively slowing or preventing the formation
of the enzyme substrate complex. At extreme pH, the bonds which maintain
the tertiary structure – hence the active site – are disrupted and the enzyme
is irreversibly denatured.
Since most human enzymes are intracellular, most have a pH optimum of
7.3-7.4. However, pepsin, which works in the acidic environment of the
stomach, has an optimum of 2.4 (Fig 3).
Fig 1. Induced fit hypothesis
Enzyme Substrate ES complex
+
1. Substrate approaches the active site of the enzyme.
2. The shape of the active site then changes to fit precisely around the
substrate – in other words, the substrate induces the active site to
change shape.
3. The reaction is catalysed and products form.
4. The products are a different shape from the substrate and therefore
diffuse away from the active site. As they do, the active site reverts to
its original shape.
Factors affecting enzyme activity
1. Temperature
Enzymes have an optimum temperature – this is the temperature at which
they work most rapidly. Below the optimum temperature, increasing
temperature will increase the rate of the reaction. This is because
temperature increases the kinetic energy of the system, effectively increasing
the number of collisions between the substrate and the enzyme’s active
site.
Temperatures above the optimum will lead to denaturation. This occurs
because the hydrogen bonds and disulphide bridges which maintain the
shape of the active site are broken. Thus, enzyme substrate complexes can
no longer be formed.
Fig 2. Effect of temperature on enzyme activity
Temperature
Rate of reaction
Fig 3. Effect of pH on enzyme activity
pH
Rate of reaction
pf3

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Bio Factsheet

April 1999 Number 43

Factors Affecting Enzyme Activity

Enzymes are globular proteins which act as biological catalysts. This means that they speed up the rate of reaction by lowering the activation energy, that is the energy required to break bonds. Enzymes are a complex tertiary and sometimes quaternary shape and catalyse reactions by forming a complex (known as the enzyme substrate complex) at a specific region of the enzyme called the active site.

Enzyme + substrate ‡ enzyme substrate complex ‡ product

Enzymes are specific; any individual enzyme can usually only catalyse one particular reaction. The induced fit hypothesis has been put forward to explain how enzymes work. The key points of the induced fit hypothesis are as follows (Fig1):

The effect of temperature on the rate of a chemical reaction is described by the term “temperature coefficient” (Q 10 ).

Q 10 = rate of reaction at T + 10 o^ C rate of reaction at ToC

Many enzymes have a Q 10 of between 2 and 3. In other words, provided that the temperature is not so high that it causes denaturation, an increase in temperature of 10oC will speed up the reaction by a factor of 2-3, that is it will double or treble it (Fig 2).

2. pH

The effect of a change in pH on enzyme activity is shown in Fig 3. As with temperature, each enzyme has an optimum pH. If pH increases or decreases much beyond this optimum, the ionisation of groups at the active site and on the substrate may change, effectively slowing or preventing the formation of the enzyme substrate complex. At extreme pH, the bonds which maintain the tertiary structure – hence the active site – are disrupted and the enzyme is irreversibly denatured.

Since most human enzymes are intracellular, most have a pH optimum of 7.3-7.4. However, pepsin, which works in the acidic environment of the stomach, has an optimum of 2.4 (Fig 3).

Fig 1. Induced fit hypothesis

Enzyme Substrate ES complex

  1. Substrate approaches the active site of the enzyme.
  2. The shape of the active site then changes to fit precisely around the substrate – in other words, the substrate induces the active site to change shape.
  3. The reaction is catalysed and products form.
  4. The products are a different shape from the substrate and therefore diffuse away from the active site. As they do, the active site reverts to its original shape.

Factors affecting enzyme activity

1. Temperature

Enzymes have an optimum temperature – this is the temperature at which they work most rapidly. Below the optimum temperature, increasing temperature will increase the rate of the reaction. This is because temperature increases the kinetic energy of the system, effectively increasing the number of collisions between the substrate and the enzyme’s active site.

Temperatures above the optimum will lead to denaturation. This occurs because the hydrogen bonds and disulphide bridges which maintain the shape of the active site are broken. Thus, enzyme substrate complexes can no longer be formed.

Fig 2. Effect of temperature on enzyme activity

Temperature

Rate of reaction

Fig 3. Effect of pH on enzyme activity

p H

Rate of reaction

Factors Affecting Enzyme Activity (^) Bio Factsheet

3. Enzyme concentration

The effect of enzyme concentration on the rate of reaction is shown in Fig

  1. At low enzyme concentrations there are more substrate molecules than there are available active sites. Increasing the number of active sites by increasing the concentration of the enzyme, therefore, effectively increases the rate of the reaction. Eventually, at point x, increasing the enzyme concentration has no effect on the rate of reaction. This is because it is now the number of substrate molecules which has become the limiting factor.

5. Cofactors

Many enzymes require cofactors to function properly. There are three main types of cofactor; co-enzymes, inorganic ions and prosthetic groups.

  1. Coenzymes are organic molecules which often contain a vitamin molecule as part of their structure. Coenzymes become loosely bound to the enzyme and move away from the enzyme once the reaction is completed. One coenzyme, e.g. NAD +^ may react with many different enzymes in many different types of reaction. NAD+^ transfers hydrogen in reactions involving dehydrogenase enzymes.
  2. Inorganic metal ions are also known as enzyme activators. They change the charge in the active site, enabling the enzyme substrate complex to form. Some become intimately bound to the enzyme, e.g. Fe2+^ in catalase. Most others accelerate the binding between the enzyme and the substrate, e.g. Mg2+^ in phosphotransferases.
  3. Prosthetic groups are coenzymes that bind permanently to the enzyme molecule and remain there even after the reactions are complete, e.g. FAD (flavin adenine dinucleotide). Like NAD +^ it carries hydrogen atoms, this time with oxidase enzymes.

6. Inhibitors

Inhibitors slow down the rate of reaction. As such, they are an essential form of cellular control, allowing enzyme reaction rate to be slowed when necessary. Some enzymes are inhibited by the end product of the reaction they catalyse (see Factsheet 31 Enzyme control of metabolic pathways).

(a) Reversible inhibitors

There are two types of reversible inhibitor:

  • competitive reversible inhibitor
  • non-competitive reversible inhibitor

Competitive reversible inhibitors are structurally similar to the normal substrate and compete with the normal substrate for the active sites (see Fig 6).

4. Substrate concentration

Fig 5 shows the effect of substrate concentration on the rate of reaction.

Enzyme

Carbonic anhydrase Catalase Lysozyme

Table 1. Enzyme turnover rates

Turnover rate

36 x 10 6 5.6 x 10 6 60

At low substrate concentration the reaction proceeds slowly. This is because there are not enough substrate molecules to occupy all of the active sites on the enzyme. As substrate concentration increases, the rate increases because there are more enzyme substrate complexes formed. At point x, however, increasing the substrate concentration will have no further effect on the rate of reaction. This is because all of the enzyme’s active sites are now occupied by substrate molecules – increasing the substrate concentration further will have no effect, because no more enzyme substrate complexes can form. The rate of reaction now depends on the turnover rate of the enzyme, i.e. the number of substrate molecules transformed by one molecule of enzyme per second. Carbonic anhydrase has the highest turnover rate of any known enzyme (Table 1).

Fig 6. Competitive reversible inhibition

glucose normal substrate

active site

glucose oxidase = enzyme

arabinose = competitive inhibitor

Fig 4. Effect of enzyme concentration on enzyme activity

Enzyme

Rate of reaction

x

Fig 5. Effect of substrate concentration on enzyme activity

Substrate concentration

Rate of reaction

x

Typical Exam Questions

  1. Describe and explain the effect of pH, temperature, enzyme concentration etc. on rate of reaction
  2. Explain the induced fit hypothesis
  3. Explain the role of cofactors