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An overview of the process of pyruvate oxidation through the pyruvate dehydrogenase complex (pdc) in the context of the tca cycle. It explains the location of pyruvate formation and oxidation, the role of cofactors and enzymes in the pdc, and the regulation mechanisms of pdc. Additionally, it covers the 8 steps of the tca cycle, the overall reaction, and the flow of carbon.
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Worksheet 12 PDH Complex and TCA
1. Where does the formation of pyruvate through glycolysis take place? cytoplasm Where does pyruvate oxidation take place? Mitochondrial matrix Pyruvate Dehydrogenase Complex is responsible for the oxidation of pyruvate. It involves three enzymes with five coenzymes associated with each enzyme. Fill in the chart. Define coenzyme. Coenzyme: small molecule (org/inorg) attached w/ enzyme that helps enzyme (electron carriers) like battery in remote. FREE FLOATING –ex. vitamins Cofactor: When the coenzyme is attached to enzyme Enzyme Enzyme’s name Cofactor involved E1 Pyruvate dehydrogenase Thiamine pyrophosphate (TPP) E2 Dihydrolipoamide transacetylase Lipoic acid (actual cofactor)/ Lipoamide (called when attached to enzyme and acetyl coA) E3 Dihydrolipoadmide dehydrogenase FAD and NAD+ The overall reaction for pyruvate oxidation is: Pyruvate + NAD+^ + CoA-------->>> Acetyl-CoA + NADH + CO 2 2. PDC enzymes to regenerate their oxidized state in order to be able to repeat the reaction over and over. Fill out the following diagram with the appropriate names and structures and show where and how these enzymes regenerate each other: Pyruvate, AcetylCoA, E1-TPP, E2-lipomide (oxidized), CoASH, CO 2 , E1-TPP-hydroxyethyl group, E2-lipomide-acetyl group, 3. 4. PDC Regulation is controlled by _____modes of regulation for the PDC: __________________: i. PDC activated by: ii. PDC inhibited by:
________________: In your own words explain how this type of modification works and fill in the figure with the appropriate enzymes and molecules used.
5. Name each of the 8 steps of the TCA Cycle including enzymes that catalyze each reaction. State which step(s) each occurs: NAD+NADH + H __________ GDP GTP or ADP ATP________ FAD FADH2_______ H2O In_______ Endergonic Reaction________ CO2 Out _________ State the overall reaction for the TCA Cycle. 6. Describe the flow of carbon that occurs as the TCA cycle is carried out. (2 Stages and original Acetyl-CoA carbons). 7. TCA regulation is once again conducted by ___________________. Name each step in which this regulation occurs and what the positive and negative regulators are. What significant about these regulators compared to those of gycolysis and gluconeogenesis? Sample Problems 1. The carbons of acetyl CoA are not lost as CO 2 in the first round of the TCA cycle because citrate is chiral. T or F 2. The reaction of the TCA cycle that produces an ATP equivalent (in the form of GTP) by substrate level phosphorylation is the conversion of succinyl-CoA to -ketoglutarate. T or F 3. Entry of acetyl-CoA into the TCA cycle is decreased when the ratio of [ATP]/[ADP] is ______. PDC (active) PDC-P (inactive)