Biochem Problem Set 6: Equilibrium Constants & Phosphorylation Pathways Comparison - Prof., Assignments of Biochemistry

Solutions to problem set 6 of a biochemistry 440 course from fall, 2008. It includes calculations of the equilibrium constants and concentration of glucose-6-phosphate for the direct phosphorylation of glucose, as well as a comparison of the phosphorylation pathways using hexokinase and glucokinase. The document also covers the balanced equation and equilibrium constant for the overall reaction.

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Biochemistry 440
Fall, 2008
Problem Set 6 Answers
1. What is the G of the hydrolysis of ATP in an E. coli cell given that [ATP] is 8 mM, [ADP]
is 1 mM and the [Pi] is 16 mM.
= -30 kJ/mol + 2.3 RT log (1 x 10-3 x 16 x 10-3 / 8 x 10-3)
= -30 kJ/mol + 5 x log 2.0 x 10-3
= -30 kJ/mol + 5 kJ/mol x -2.7
= -43 kJ/mol
2. The catabolism of glucose is an important source of energy for all cells. It begins with the
following transformation which is the first step of the glycolytic pathway:
Glucose --> Glucose 6-phosphate
Theoretically, the cell could phosphorylate glucose directly with inorganic phosphate (Pi) like
so:
Glucose + Pi --> Glucose 6-phosphate + H2O G'0 = +10 kJ/mol
a. Calculate the equilibrium constant for this reaction at 25˚C.
G’˚ = -2.3RT log K’eq
10 = -5 * log K’eq
-2 = log K’eq
0.01 = K’eq
b. Is it favorable under standard conditions?
No, because ΔG'0 > 0.
c. If in a typical cell, [glucose] is 5 mM and [Pi] is 1 mM, what would be the concentration of
glucose-6 phosphate at equilibrium if phosphorylation occurred by the reaction above?
K'eq = [G 6-P]/[Glucose]*[Pi]
0.01 = [G 6-P]/5 x 10-3 * 1 x 10-3
0.01 * 5 X 10-6 = [G 6-P]
5 x 10-8 or 50 nM = [G 6-P].
d. Does this direct phosphorylation of glucose represent a reasonable route for the catabolism of
glucose? Explain.
No, 50 nM glucose 6-phosphate is very low.
e. The cell actually accomplishes the phosphorylation of glucose by coupling it to the
hydrolysis of ATP in a reaction catalyzed by the enzyme hexokinase:
!G=!G'0+2.3RT log
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Download Biochem Problem Set 6: Equilibrium Constants & Phosphorylation Pathways Comparison - Prof. and more Assignments Biochemistry in PDF only on Docsity!

Fall, 2008

Problem Set 6 Answers

  1. What is the ∆G of the hydrolysis of ATP in an E. coli cell given that [ATP] is 8 mM, [ADP] is 1 mM and the [Pi] is 16 mM.

= - 30 kJ/mol + 2.3 RT log (1 x 10

  • 3

x 16 x 10

  • 3

/ 8 x 10

  • 3

= - 30 kJ/mol + 5 x log 2.0 x 10-^3

= - 30 kJ/mol + 5 kJ/mol x - 2.

= - 43 kJ/mol

  1. The catabolism of glucose is an important source of energy for all cells. It begins with the following transformation which is the first step of the glycolytic pathway: Glucose --> Glucose 6-phosphate Theoretically, the cell could phosphorylate glucose directly with inorganic phosphate (Pi) like so: Glucose + Pi --> Glucose 6-phosphate + H 2 O ∆G'^0 = +10 kJ/mol a. Calculate the equilibrium constant for this reaction at 25˚C.

∆G’˚ = - 2.3RT log K’eq

10 = - 5 * log K’eq

- 2 = log K’eq

0.01 = K’eq

b. Is it favorable under standard conditions?

No, because ΔG'

0

c. If in a typical cell, [glucose] is 5 mM and [Pi] is 1 mM, what would be the concentration of glucose-6 phosphate at equilibrium if phosphorylation occurred by the reaction above?

K'eq = [G 6-P]/[Glucose]*[Pi]

0.01 = [G 6-P]/5 x 10

  • 3

* 1 x 10

  • 3

0.01 * 5 X 10

  • 6

= [G 6-P]

5 x 10 -^8 or 50 nM = [G 6-P].

d. Does this direct phosphorylation of glucose represent a reasonable route for the catabolism of glucose? Explain.

No, 50 nM glucose 6-phosphate is very low.

e. The cell actually accomplishes the phosphorylation of glucose by coupling it to the hydrolysis of ATP in a reaction catalyzed by the enzyme hexokinase:

! G =! G '

0 +2.3 RT log

[ C i ][ Di ]

[^ Ai ][ B i ]

Fall, 2008 f. Given that ATP + H 2 O --> ADP + Pi with ΔG’^0 = - 30 kJ/mol, write a balanced equation for the overall reaction and show the ΔG’^0 for the net reaction

G + Pi --> G 6-P + H 2 O ΔG’

0

= +10 kJ/mol

ATP + H 2 O --> ADP + Pi ΔG’^0 = - 30 kJ/mol

G + ATP --> ADP + G 6-P ΔG’

0

= - 20 kJ/mol

g. Calculate the K’eq for the net / overall reaction at 25˚C.

∆G’˚ = - 2.3RT log K’eq

  • 20 = - 5 * log K’eq

4 = log K’eq

10,000 = K’eq

h. The concentration of glucose typically found in cells is 5 mM. If the concentration of ATP

were 2 mM and the concentration of ADP were 1 mM, what concentration of glucose- 6 phosphate would theoretically be present at equilibrium if the phosphorylation of glucose is coupled to the hydrolysis of ATP?

K'eq = [ADP][G 6-P]/[G][ATP] = (1 mM x [G 6-P])/(5 mM x 2 mM) = 10,

[G 6-P] = 1 x 10

5

mM or 100 M!

(This theoretiocal example is supposed to show the magnitude of [G 6-P] yield the coupling to ATP hydrolysis could provide, using the K'eq from i). Physiological levels of Glucose 6-phosphate are actually around 250 μM). i. Quantitatively compare your answer in part (g) to your answer in part (c). What does coupling of the reactions do for the cell?

From part (g): 100 M glucose 6-P

From part (c) = 50 nM or 50 x 10-^9 M

2 x 10^9 fold more glucose 6-P

Coupling of the reactions makes the production of Glucose 6-P 2 x 10^9 - fold

more favorable.

Fall, 2008 B. What can you deduce about the relationship of A and Q? Explain.

A appears to be made directly into Q. At the earliest time point (

minutes), the amount of A + the amount of Q = 1000 cpm/ml. At that time

point all the A that has disappeared has been made into Q.

C. Is F made directly from Q? Why or why not?

No. Look at the 50 minute time point, the amount of radioactivity in A, Q

and F does not add up to 1000 cpm/ml. There must be something missing.

D. Using the graph above, deduce a metabolic pathway that converts A into F. (i.e. A -->? -

  • ?, etc.). Explain your answer.

A --> Q -->? -- > F. Since the amount of radioactivity in A, Q and F does not

add up to 1000 cpm/ml at any of the time points except the first one, there must

be at least one compound missing after Q. (There could be more than one if

each one has a very short half-life, but there is at least one.) Assuming there is

only one missing compound, try sketching in the radioactivity of the missing

compound vs time. (Remember the amount of radioactivity in A, Q, F and the

missing compound should always equal 1000 cpm/ml.)