Problem set for anth 5 winter 2023, Assignments of Physical anthropology

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Anthropology 005
Problem Set # 2
Winter 2023
1. Often we can refine of our understanding of the way the world is by contrasting that with ways it is not
(sometimes called “counterfactuals”). Consider: i) a jar into which we pour equal amounts of yellow and blue
liquid, and ii) another jar into which we pour equal numbers of yellow and blue marbles. Put the lids on and
shake both jars. In the first jar we now see a green liquid. In the second we see a mosaic of yellow and blue
marbles. When Gregor Mendel was alive and studying pea plants, people thought that heredity was like the
first jar (blending), but Mendel proved that is was more like the second (particulate).
A. There is evidence from both Mendel’s F1 and, separately, from his F2 generation that supports his
particulate interpretation. What would each generation have been like if inheritance were blending, and what
did Mendel actually observe?
B. In additional experiments not discussed in your textbook, Mendel took some of his F1 hybrids and,
instead of breeding them among each other, he did what is called a backcross, breeding them with their
homozygote recessive parents. What does the particulate model predict about the offspring of that backcross?
(Hint: construct the appropriate Punnett square.)
C. In particulate hereditary systems like the one Mendel described, “variation is conserved.” What does that
phrase mean? (Hint: what happened in the F2 generation.)
D. If (counterfactually) inheritance were blending, would variation be conserved; and would that have any
effect on natural selection? Explain your answer.
2. Figure 3-3 of your textbook illustrates how meiosis produces sex cells. There are two important features of
meiosis: a reduction from a diploid to a haploid state, and recombination—the exchange of genetic material
between paternally derived and maternally derived chromosomes.
A. What is the effect of recombination on the diversity of an individual’s haploid gametes?
B. Recombination affects linkage and the composition of haplotypes. Alleles are said to be linked if they pass
from one generation to the next together, and these “fellow travelers” constitute a haplotype. To illustrate
these points let’s look at panel 1 of Figure 3-3. There, alleles A, B, and C are linked because they arrived
together in this individual from her father; and likewise, alleles A’, B’, and C’ are linked because they arrived
together from her mother. Thus, she was born with two different Chromosome 1 haplotypes, the one
containing A, B, and C, and the one containing A’, B’, and C’. The rest of Figure 3-3 shows the formation of
her gametes (sex cells). When she produced those gametes, why were B and C more likely to remain linked
to each other than to A, that is, why were B and C more likely to remain on the same haplotype? (Hint:
Assume the recombination sites are randomly distributed along the chromosome.)
C. In every generation recombination forms new haplotypes. How do those new haplotypes compare to the
haplotypes of the previous generation? (They do differ in one systematic way; what is that difference?)
3. The “stuff of heredity” would have to do two things: i) make very accurate copies of itself and ii) include
instructions for building phenotypes. DNA does both of those, and base-pairing rules are central to both
processes.
A. Explain the role of base pairing rules in DNA copying.
B. Explain the roles of base pairing rules in DNA’s assembly of phenotypes.
4. In Problem set 1 you were asked to distinguish between an evolutionary change and a developmental
change. That distinction is important to understand. However, it is also critical to realize that adaptive
developmental changes have been “preprogrammed” by the prior operation of natural selection (in previous
generations).
A. Facultative adaptations, like suntanning, are examples of that kind adaptive developmental change. What
does the word “adaptive” mean in that sentence?
B. What is suntanning adapted to; what were the relevant selection pressures that shaped this facultative
adaptation over evolutionary time?
C. What is the environmental trigger for suntanning, and does it make sense for this facultative adaptation to
be tied to that feature of the environment? Explain.
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Anthropology 005 Problem Set # 2 Winter 2023

  1. Often we can refine of our understanding of the way the world is by contrasting that with ways it is not (sometimes called “counterfactuals”). Consider: i) a jar into which we pour equal amounts of yellow and blue liquid, and ii) another jar into which we pour equal numbers of yellow and blue marbles. Put the lids on and shake both jars. In the first jar we now see a green liquid. In the second we see a mosaic of yellow and blue marbles. When Gregor Mendel was alive and studying pea plants, people thought that heredity was like the first jar (blending), but Mendel proved that is was more like the second (particulate). A. There is evidence from both Mendel’s F1 and, separately, from his F2 generation that supports his particulate interpretation. What would each generation have been like if inheritance were blending, and what did Mendel actually observe? B. In additional experiments not discussed in your textbook, Mendel took some of his F1 hybrids and, instead of breeding them among each other, he did what is called a backcross, breeding them with their homozygote recessive parents. What does the particulate model predict about the offspring of that backcross? (Hint: construct the appropriate Punnett square.) C. In particulate hereditary systems like the one Mendel described, “variation is conserved.” What does that phrase mean? (Hint: what happened in the F2 generation.) D. If (counterfactually) inheritance were blending, would variation be conserved; and would that have any effect on natural selection? Explain your answer.
  2. Figure 3-3 of your textbook illustrates how meiosis produces sex cells. There are two important features of meiosis: a reduction from a diploid to a haploid state, and recombination—the exchange of genetic material between paternally derived and maternally derived chromosomes. A. What is the effect of recombination on the diversity of an individual’s haploid gametes? B. Recombination affects linkage and the composition of haplotypes. Alleles are said to be linked if they pass from one generation to the next together, and these “fellow travelers” constitute a haplotype. To illustrate these points let’s look at panel 1 of Figure 3-3. There, alleles A, B, and C are linked because they arrived together in this individual from her father; and likewise, alleles A’, B’, and C’ are linked because they arrived together from her mother. Thus, she was born with two different Chromosome 1 haplotypes, the one containing A, B, and C, and the one containing A’, B’, and C’. The rest of Figure 3-3 shows the formation of her gametes (sex cells). When she produced those gametes, why were B and C more likely to remain linked to each other than to A, that is, why were B and C more likely to remain on the same haplotype? (Hint: Assume the recombination sites are randomly distributed along the chromosome.) C. In every generation recombination forms new haplotypes. How do those new haplotypes compare to the haplotypes of the previous generation? (They do differ in one systematic way; what is that difference?)
  3. The “stuff of heredity” would have to do two things: i) make very accurate copies of itself and ii) include instructions for building phenotypes. DNA does both of those, and base-pairing rules are central to both processes. A. Explain the role of base pairing rules in DNA copying. B. Explain the roles of base pairing rules in DNA’s assembly of phenotypes.
  4. In Problem set 1 you were asked to distinguish between an evolutionary change and a developmental change. That distinction is important to understand. However, it is also critical to realize that adaptive developmental changes have been “preprogrammed” by the prior operation of natural selection (in previous generations). A. Facultative adaptations, like suntanning, are examples of that kind adaptive developmental change. What does the word “adaptive” mean in that sentence? B. What is suntanning adapted to; what were the relevant selection pressures that shaped this facultative adaptation over evolutionary time? C. What is the environmental trigger for suntanning, and does it make sense for this facultative adaptation to be tied to that feature of the environment? Explain.

D. Is sun burning also a facultative adaptation? Why or why not?

A. If the inheritance were blending Mendel should observe the traits of the pea plants combines and got

diluted in future generation, but Mendel actually observed the result which is similar to the second jar, the inheritance is particulate, the offspring shown a variety of traits which presented on their phenotypes. B. The model predicts both parents of the F1 generation have the Tt genotypes which gives the chance to produce TT and tt in a Punnett square. (1/4 TT, 2/4 Tt, 1/4 tt). C. Mendel described “the variation is conserved” because the offspring will only inherited by the given traits from their parents, and only the dominant particle is expressed in the phenotype in heterozygotes. D. If inheritance were blending, the variation would not be conserved because the blending will keep dilute the traits from the parents which can involve new traits after multiple dilutions. It will not affect the natural selection, because only individuals that able to leave their offsprings can exist, the deteriorated individuals will be filtered by the selection.

A. Recombination is an exchange of genes between maternal and paternal chromosomes that occurs during meiosis. It will guarantees that each new individual will have a genotype that never existed before. B. According to the textbook, “the farther part two loci are, the more likely they are to have a cross-over point fall between them” (pg. 35). C. As the recombination guarantees that each new individual will a new genotype that never exited before, the linkage kept the loci be separated into different haploid sex sells. The location of their loci is never the same as their parents.

A. The base-pairing rules allow DNA to make very accurate copies of itself, bases are “alphabet” of genetic code, as “Adenine bonds only with Thymine; Cytosine bonds only with Guanine.” B. Genes direct assembly of phenotypes which selection evaluates, transmit phenotype recipes across generations, provide link between reproductive success and spread of favored traits.

A. Adaption is local, according to the textbook “selection builds facultative adaptation when key environment challenges vary within the lifetimes of individuals” (pg. 54). The adaptation happens in shorter time and faster and tracks the variation of environment. B. The dark pigmentation are restricted to high UVb exposure areas, and the suntanning is the adaptation for melanin evolved to protect our skin against the cancer-causing effects of UVb. C. The environmental trigger for suntanning is a high UVb exposure area that body needs more melanin production, which will having more dark pigmentation to cause the suntanning. D. The sunburning is not a facultative adaption. It’s is not a programmed response but a failure to respond to the environment which causes the spontaneous combustion and it is the pre-cancer stage. Rather than facultative adaptation, the sunburning is much closer to the susceptibility.