Third problem set in anth 5 winter quarter 2023, Assignments of Physical anthropology

Third problem set in anth 5 winter quarter 2023

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Anthropology 005
Problem Set # 3:
Winter 2023
Scientists have various methods for studying the world we live in; one of those is
building mathematical models of it. A mathematical model makes certain assumptions
and attempts to answer what would happen if those assumptions were true. A field
called population genetics focuses on mathematical models of evolution. Question 1 on
this problem set will introduce you to some basic population genetics. While the field
can be quite complex, this problem set isn’t, and won’t go past simple Algebra I. To
answer the various parts of question 1, you’ll need the equations and techniques
developed on pages 64-66 of your textbook. They rely on the binomial expansion;
remember that? It’s the key to the “proportional Punnett Square”. (If case you need
additional support on this question, I put a video called “Supplemental video explaining
the mathematics of population genetics” on the website, in the Week 3 module.)
1. Sickle-cell anemia is a disease that occurs when a person is homozygous for a
particular allele, s, and this condition is very often fatal. It might seem odd that
there would be an allele that causes a fatal disease. You probably wonder why
selection hasn’t gotten rid of this allele, and we’re going to help you figure that out.
Follow the stepping stones…
A. The Hardy-Weinberg Equilibrium is written as:
1 = (p2 + 2pq + q2)
Please define each of the four terms in the equation (1, p2, 2pq, q2); what does each
represent?
B. Now let’s see if population genetics can help us understand the fate of the sickle-
cell allele. Let’s assume that some homozygote ss individuals do survive and reproduce,
but on average they produce only 15% as many offspring as homozygote SS and
heterozygote Ss individuals; they are experiencing strong negative selection. Let’s
also assume that the SS and Ss types don’t differ from each other in their
reproductive success. Finally, let’s specify that the starting frequencies of the S and
s alleles (p and q) are 0.7 and 0.3, respectively. Given these values, please solve for p’
and q’ (the frequencies of S and s after one generation of selection). After one
generation, has anything changed? Does that answer make sense? Please show your
work!
C. If selection were to operate in this same way for many generations, what would be
the eventual frequency of the (recessive) s allele? Why?
D. Now let’s add an important real-world observation: Heterozygote individuals (who
have one copy of the s allele) have some resistance to malaria, an insect-transmitted
disease which can also be fatal (hundreds of thousands of people die of malaria every
year). In a particular area where malaria is common these heterozygotes (Ss) have
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Anthropology 005 Problem Set # 3: Winter 2023 Scientists have various methods for studying the world we live in; one of those is building mathematical models of it. A mathematical model makes certain assumptions and attempts to answer what would happen if those assumptions were true. A field called population genetics focuses on mathematical models of evolution. Question 1 on this problem set will introduce you to some basic population genetics. While the field can be quite complex, this problem set isn’t, and won’t go past simple Algebra I. To answer the various parts of question 1, you’ll need the equations and techniques developed on pages 64-66 of your textbook. They rely on the binomial expansion; remember that? It’s the key to the “proportional Punnett Square”. (If case you need additional support on this question, I put a video called “Supplemental video explaining the mathematics of population genetics” on the website, in the Week 3 module.)

  1. Sickle-cell anemia is a disease that occurs when a person is homozygous for a particular allele, s, and this condition is very often fatal. It might seem odd that there would be an allele that causes a fatal disease. You probably wonder why selection hasn’t gotten rid of this allele, and we’re going to help you figure that out. Follow the stepping stones… A. The Hardy-Weinberg Equilibrium is written as: 1 = (p^2 + 2pq + q^2 ) Please define each of the four terms in the equation (1, p^2 , 2pq, q^2 ); what does each represent? B. Now let’s see if population genetics can help us understand the fate of the sickle- cell allele. Let’s assume that some homozygote ss individuals do survive and reproduce, but on average they produce only 15% as many offspring as homozygote SS and heterozygote Ss individuals; they are experiencing strong negative selection. Let’s also assume that the SS and Ss types don’t differ from each other in their reproductive success. Finally, let’s specify that the starting frequencies of the S and s alleles (p and q) are 0.7 and 0.3, respectively. Given these values, please solve for p’ and q’ (the frequencies of S and s after one generation of selection). After one generation, has anything changed? Does that answer make sense? Please show your work! C. If selection were to operate in this same way for many generations, what would be the eventual frequency of the (recessive) s allele? Why? D. Now let’s add an important real-world observation: Heterozygote individuals (who have one copy of the s allele) have some resistance to malaria, an insect-transmitted disease which can also be fatal (hundreds of thousands of people die of malaria every year). In a particular area where malaria is common these heterozygotes (Ss) have

the highest reproductive success; ss individuals still only do 15% as well as the heterozygotes, but now SS homozygotes also suffer (from malaria) and do only 60% as well as the heterozygotes. In other words, selection is acting against both homozygotes, though not with equal intensity. Start with the same initial frequencies of S and s as in question 1B (0.7 and 0.3). In this case what will the frequencies of S and s be after one generation of selection? Please show your work! E. Under this new selective regime (heterozygote superiority) would your answer to question 1C change? How and why? F. Given that malaria is a tropical disease, transmitted by tropical mosquitoes, and comparing your answers to 1C and 1E, do you expect sickle-cell anemia to be more common in West Africa or in Sweden? Why?

  1. Gradualism is central to contemporary evolutionary theory in that it relates to both adaptation and speciation. Gradualism is not the idea that evolution is always slow. For example, you know that head and digestive anatomy changed in a Mediterranean lizard population in just 30 generation, and that coat color changed in desert-dwelling mice in less than 1,000 years. A. Since it’s so important, what is gradualism; what is the key idea that R. A. Fisher’s microscope analogy is intended to convey. B. What is the logical defense of that key idea; what do we know about mutation that makes that key idea likely to be true? C. How does that key idea help us understand the evolution of complex adaptations, like the eye? D. Some mollusks (such as squid) have evolved eyes as complex as yours. What is the evidence that eye evolution in mollusks was gradual? E. How do we tell species apart? F. Given your answer to 2E, what role does gradualism play in our model of speciation (the process that produces new species)? Explain.

A. p represents the frequency of the dominant allele; q represents the frequency of the recessive allele; p^2 represents the frequency of the homozygous dominant genotype; 2pq represents the frequency of the heterozygous genotype; q^ represents the frequency of the homozygous recessive genotype. B. Given p=0.7; q=0.3; p^2=0.49; 2pq=0.42; q^2=0.09; (0.15)p^2+(0.15)2pq+q^2=0.150.49+0.150.42+0.09=0.2265; p’=[(0.15) p^2+(0.15) (2pq)/2]/0.2265=[0.0735+0.063/2]/0.2265=0.4636; q’=[0.15(2pq)/2+q^2]/ 0.2265=[0.15(0.42)/2+0.09]/0.2265=0.5364; check the result: p’+q’=0.4636+0.5364=1; After one generation, the selection filter decreased half of