Protein Purification and Affinity Based Purification, Lecture notes of Chemistry

Affinity-based Protein Purification and Protein Purification System are discussed in this section.

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43 Discover Reliable Tools for Protein Analysis
Protein Purification
4.1 Affinity-based Protein Purification 45
HaloTag® Fusion Proteins
HaloTag® Protein Purification System (E. coli) 48
HaloTag® Mammalian Protein Purification and Detection Systems 49
His-tagged Proteins
HisLink Protein Purification Resin 51
HisLink Spin Protein Purification System 52
HisLink 96 Protein Purification System 53
Biotinylated Proteins
SoftLink Soft Release Avidin Resin 54
PinPoint Xa Protein Purification System (Production and Purification) 55
4.2 Magnetic Affinity-based Purification
and Pull-Down Strategies 56
GST-tagged Proteins
MagneGST Protein Purification System 57
HaloTag® Fusion Proteins
Magne HaloTag® Beads 59
His-tagged Proteins
MagneHis Protein Purification System 60
Maxwell® 16 Polyhistidine Protein Purification Kit 61
Magnetic Stands and Spacers
Magnetic Stands and Spacers 62
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4.1 Affinity-based Protein Purification 45

HaloTag ®^ Fusion Proteins

HaloTag ®^ Protein Purification System (E. coli) 48 HaloTag ®^ Mammalian Protein Purification and Detection Systems 49

His-tagged Proteins

HisLink ^ Protein Purification Resin 51 HisLink ^ Spin Protein Purification System 52 HisLink ^ 96 Protein Purification System 53

Biotinylated Proteins

SoftLink ^ Soft Release Avidin Resin 54 PinPoint ^ Xa Protein Purification System (Production and Purification) 55

4.2 Magnetic Affinity-based Purification

and Pull-Down Strategies 56

GST-tagged Proteins

MagneGST ^ Protein Purification System 57

HaloTag ®^ Fusion Proteins

Magne ^ HaloTag®^ Beads 59

His-tagged Proteins

MagneHis ^ Protein Purification System 60 Maxwell ®^ 16 Polyhistidine Protein Purification Kit 61

Magnetic Stands and Spacers

Magnetic Stands and Spacers 62

Protein Purifi cation

Protein purification is fundamental to the study of protein function and involves a series of processes

to express, enrich and purify a protein of interest from

a complex mixture such as cell lysate. The fastest and most powerful method for this purpose is affinity

purification. During the purification of recombinant proteins it is convenient to use affinity tags such as

HaloTag, GST- or His-tag. By introducing a cleavage- site between the protein fusion tag and the protein

sequence, the tag can be enzymatically removed after the purification procedure.

In this chapter different affinity tags will be introduced as well as the corresponding resins and magnetic

supports that can be used for low- to high-

throughput protein purification.

Protein Purifi cation

46 Discover Reliable Tools for Protein Analysis46 Discover Reliable Tools for Protein Analysis

4

Biotin Tags

The power of the streptavidin-biotin interaction is used in a number of applications, including the detection of various biomolecules. Bacterial streptavidin and its analog chicken avidin have a very high binding affinity for biotin (vitamin H). In fact, this is one of the strongest non-covalent interactions known in biology. The strength of the binding is a major drawback for its use as a puri- fication technique, since the elution conditions would have to be so harsh that they would destroy the purified protein.

Nevertheless, there are several ways to circumvent this strong binding and harness the power of the streptav- idin-biotin interaction for the purification of recombinant proteins. One strategy is to fuse the protein of interest (POI) to a peptide sequence that is biotinylated in vivo. The biotinylation peptide sequence is fused to a protease cleavage site allowing a gentle release of the protein of interest by protease digestion. Other strate- gies are based on biotin-mimicking peptides such as Strep Tag, which binds to native and modified versions of streptavidin and avidin, enabling successful protein elution under mild conditions (e.g., competitive elution with D-desthiobiotin).

Glutathione-S-Transferase (GST)

The use of the affinity tag glutathione-S-transferase (GST) is based on the strong affinity of GST for immo- bilized glutathione-covered matrices. Glutathione-S- transferases are a family of multifunctional cytosolic proteins that are present endogenously in eukaryotic organisms but normally not found in bacteria. As such, GST-based purification is not recommended for eukaryotic systems (e.g., insect, mammalian). The 26kDa GST affinity tag enhances the solubility of many eukaryotic proteins expressed in bacteria. After capture and washing, the tagged protein is eluted with soluble glutathione.

HaloTag®^ Protein Tag

Protein fusion tags are frequently used to aid in expression of suitable levels of soluble protein as well as for purification. The HaloTag®^ fusion protein is engineered to enhance expression and solubility of recombinant proteins in E. coli , as well as to provide superb recovery of even low- expressing proteins, such as in mammalian expression systems. HaloTag®^ technology is based on the formation of a covalent bond between a protein fusion tag (HaloTag®) and synthetic chemical ligands. By interchanging different synthetic ligands researchers ultimately control the function and properties of the HaloTag®^ fusion protein. The HaloTag® system is designed to provide broad experimental flexibility and superb performance in both cell-based and biochemical assays such as protein purification, without switching fusion tags, or recloning. Available HaloTag®^ ligands include magnetic and nonmagnetic beads, glass slides, cell- permeable and impermeable fluorescent ligands, biotin, and reactive ligands to enable researchers to build their own custom HaloTag®^ ligands and surfaces. (Figure 4.1). For protein purification HaloTag®^ Technology is compatible with many protein expression systems and can be applied to proteins expressed in E. coli , mammalian cells and cell- free systems. HaloTag®^ protein is a good affinity tag for puri- fication and also a good solubility tag. The lack of an endog- enous equivalent of the HaloTag®^ protein in mammalian and most prokaryotic cells minimizes the chances of nonspecific interactions. The combination of covalent capture with rapid binding kinetics overcomes the equilibrium-based limitations associated with traditional affinity tags, and enables efficient capture even at low expression levels.

47 Discover Reliable Tools for Protein Analysis47 Discover Reliable Tools for Protein Analysis

4

12148MB

HaloTag ®

HaloTag®^ Ligand (Chloroalkane + Functional Group)

Covalent Bond

TEV

cleavage site

Covalent bond between HaloTag ®^ protein and HaloTag ®^ ligand (chloroalkane + functional group).

+ Cl– O O

O O

Cl –

POI

HaloTag ® POI

Fluorescent Ligands: for Cellular Imaging, Detection and Protein-Interaction Studies (BRET). They come in many different colors, as cell permeable ligands and as non-permeable ligands.

Non-fluorescent Ligands: for Protein Detection, e.g., Biotin; PEG-Biotin.

Surface Ligands: for Protein Purification and Protein-Interaction Studies (Pull-downs), e.g., Magnetic Beads; Resins; Arrays.

Reactive Ligands: to attach functional group of choice, e.g., Positron Emission Tomography (PET) ligands, magnetic resonance reagents.

Figure 4.1. Schematic of HaloTag®^ technology consisting of the HaloTag®^ protein fused to a protein of interest (POI) and a selection of synthetic HaloTag®^ ligands carrying different functional groups. HaloTag®^ ligands specifically and covalently bind to the HaloTag®^ protein fusions.

4

HaloTag

® Mammalian Protein Purifi cation and

Detection Systems

Quick purification of HaloTag®^ fusion proteins from mammalian cell culture lysates

and supernatant.

Description

The HaloTag®^ Mammalian Protein Purification System is an optimized kit for rapid purification of HaloTag® fusion proteins from mammalian cell culture lysates and cell culture supernatants. An optimized TEV protease recognition site within the interconnecting polypeptide separates the HaloTag®^ protein and the fusion partner. The kit contains HaloLink™^ Resin, HaloTEV Protease, 50X Protease Inhibitor Cocktail as well as Spin Columns. The covalent binding of HaloTag®^ fusion proteins, coupled with the low nonspecific binding of the HaloLink™^ Resin, provides superior purity and recovery of recombinant proteins from cultured mammalian cells, even at low expression levels. The HaloTag®^ Mammalian Protein Detection and Purification System also contains a fluores- cent ligand (TMRDirect™^ Ligand) for the easy detection of HaloTag®^ fusion proteins by in-gel imaging, flow cytometry or microscopy applications. The simple-to-use fluorescent detection of HaloTag®^ fusion proteins facilitates rapid opti- mization of expression and purification conditions.

Principle

The protein of interest (POI), when fused to the HaloTag ®^ protein, will covalently bind to the HaloLink™ Resin (Figure 4.2). The covalent nature of the linkage enables stringent and lengthy wash conditions without concern of leaching the protein of interest off the resin. Post wash the POI is eluted by proteolytic cleavage with HaloTEV Protease. Since the HaloTEV Protease is fused to HaloTag®^ protein, the cleavage step and protease capture can be performed in a single step that separates the POI from the HaloTag fusion tag and the HaloTEV Protease.

9532MB

Covalently bind the HaloTag®^ fusion protein (POI) to HaloLink™^ Resin.

Release POI using HaloTEV Protease, which will remain covalently attached to the HaloLink™^ Resin.

Recover purified protein of interest.

HaloTEV Protease HaloTag®^ protein Protein of Interest

HaloLink™ Resin

HaloLink™ Resin

POI POI

POI

POI

Figure 4.2. Schematic of the purification steps used with the HaloTag® Mammalian Protein Purification System.

Affi nity-based Protein Purification

Features and Benefits

  • High Purity: Covalent capture allows extensive and/or stringent washes without loss of bound protein, result- ing in very low (<0.1%) nonspecific binding and a highly pure protein.
  • High Protein Recovery: Rapid covalent capture. Recovery is highly efficient, commonly >75%.
  • High Yield: >7mg HaloTag®^ fusion protein per ml of HaloLink ™^ Resin.
  • Easily Scalable: From 1ml up to 1L of mammalian cell culture.
  • Easy Detection: Fluorescent HaloTag®^ ligands facilitate monitoring and optimization of the protein expression and purification procedure.

4

Fluorescent labeling of HaloTag®^ fusion proteins with the HaloTag ®^ TMRDirect™^ Ligand provides a rapid and convenient method to optimize protein expression and to monitor purification efficiency. HaloTag®^ protein fusions are briefly incubated with HaloTag®^ TMRDirect™^ Ligand prior to SDS-PAGE (Figure 4.3). After electrophoresis the proteins can be imaged without additional processing using a either a fluorescence gel scanner, such as GE Typhoon, or BIORAD ChemiDoc™^ MP system.

Affi nity-based Protein Purification

Ordering Information HaloTag®^ Mammalian Protein Purification System (Cat.# G6790) HaloTag®^ Mammalian Protein Detection and Purification System (Cat.# G6795)

Figure 4.3 Schematic diagram of the fluorescent labeling of HaloTag® fusion protein with the HaloTag®^ TMRDirect™^ Ligand.

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Dilute HaloTDilute HaloTDilute HaloTagag ®^ TMRDirect™ Ligand to make a 50μM working solution.

Combine lysate, HaloTCombine lysate, HaloTCombine lysate, HaloTagag ®^ Protein Purification Buffer and HaloTfer and HaloTfer and HaloTagag ® TMRDirect™ Ligand.

Add 4X SDS gel loading buffer.

Load samples onto SDS-polyacrylamide gel.

Scan gel (532Ex, 580Em).

Incubate at room temperature for 15 minutes.

Incubate at 70°C for 3 minutes.

References

Mammalian Cells Ohana, R. et al. (2011) HaloTag-based purification of functional human kinases from mammalian cells. Protein Expr. Purif. 76 (2), 154–64. Sun, X. et al. (2013) Hsp90 inhibitor 17-DMAG decreases expression of conserved herpesvirus protein kinases and reduces virus production in Epstein-Barr virus-infected cells. J. Virol. 87 (18), 10126–38. Ryu MJ, (2012) Oncogenic Kras expression in postmitotic neurons leads to S100A8-S100A9 protein overexpression and gliosis. J. Biol. Chem. 287 (27), 22948–58. Plant Cells Lang, C. (2006) Purification from Plant. HaloTag: a new versatile reporter gene system in plant cells. J. Exp. Bot. 57 (12), 2985–92. Yeast Kardon, J.R. (2009) Regulation of the processivity and intracellular localization of Saccharomyces cerevisiae dynein by dynactin. Proc. Natl. Acad. Sci. USA. 106 (14), 5669–74.

Additional Information

Depending on the orientation of fusion constructs, 6 amino acids for N-terminal fusion constructs or 13 amino acids for C-terminal fusion constructs will remain on the POI after HaloTEV cleavage.

4

Affi nity-based Protein Purification

HisLink

™ Spin Protein Purification System

Purification of polyhistidine (His)-tagged proteins in small volumes from bacterial cells.

Description

The HisLink™^ Spin Protein Purification System provides a simple and fast system for purifying overexpressed His-tagged proteins from a 700μl sample of E. coli cell culture, using either a centrifuge- or vacuum-based method. The system contains cell lysis buffer, HisLink™^ Resin, DNase I, Buffers, Collection Tubes and Spin Columns.

Ordering Information HisLink™^ Spin Protein Purification System (Cat.# V1320)

Principle

Protein can be purified directly from culture medium containing bacterial cells expressing a polyhistidine-tagged protein. The bacterial cells are lysed using FastBreak™^ Cell Lysis Reagent, followed immediately by addition of HisLink™ Protein Purification Resin to the culture. Addition of these reagents results in simultaneous bacterial cell lysis and binding of the polyhistidine-tagged proteins. The samples then are transferred to a Spin Column where unbound protein is removed while the affinity resin is washed, and the target protein is recovered by elution. This system requires the use of a tabletop centrifuge or vacuum manifold. A schematic diagram of protein purification using the HisLink ™^ Spin System is shown in Figure 4..

Features and Benefits

  • Simple: No cell culture preparation steps (no preclearing) required.
  • Quick: No lengthy lysozyme incubations required to lyse cells.
  • Efficient: Binding capacity of 1mg of polyhistidine- tagged protein per spin column.

Reference

Engel, L. et al. (2006) HisLink™^ Spin Protein Purification System: Maximum Versatility in a Small Package. Promega Notes 93 , 2-4.

Lyse cells and bind pr the resin.otein to

Transfer contents to Spin Column in a Collection TCollection TCollection Tube orube or Vacuum Adapter.

Spin Column Spin Column

V Adapteracuum Collection TCollection TCollection Tubeube

Centrifuge or apply vacuum for 5 seconds.

Centrifuge or apply vacuum for 5 seconds.

Centrifuge 1 minute.

Add HisLink™ Binding/Wash Buffer.

Place Spin Column into a new 1.5ml micr tube. Add 200μl of HisLink™ocentrifuge Elution Buffer.

Repeat wash steps.

Figure 4.4. Schematic of polyhistidine-tagged protein purification using the HisLink™^ Spin Protein Purification System.

4

HisLink

™ 96 Protein Purification System

Purification of polyhistidine (His)-tagged proteins from bacterial and mammalian

cells using a vacuum-based format.

Description

The HisLink™^ 96 Protein Purification System provides a simple, and quick method of high-throughput purification of polyhi- stidine- or HQ-tagged overexpressed proteins from E. coli using a vacuum-based method. The system is designed to purify expressed polyhistidine-tagged proteins directly from deep-well 96-well culture plates. The HisLink™^ System is amenable to manual or automated methods, such as the Beckman Coulter Biomek®^ 2000 or FX for high-throughput applications. The System contains cell lysis buffer, HisLink™^ Resin, DNase I, Buffers and HisLink™^ 96 Filtration & Collection Plates.

Principle

In preparation for protein purification, bacterial cells expressing a polyhistidine-tagged protein are lysed in culture using the provided FastBreak™^ Cell Lysis Reagent. The HisLink™^ Resin is added to the lysate and mixed; the polyhistidine-tagged proteins bind within a few minutes. Transfer the samples to a Filtration Plate, wash the resin to remove contaminants, and recover the target protein by elution (Figure 4.5).

Features and Benefits

  • Simple: No centrifugation required—lysis buffer is added directly to cells in culture medium.
  • Quick: No long lysozyme incubations are required for cell lysis.
  • Versatile: Perform purification manually or on an automated platform.
  • Efficient: Binding capacity of 1mg of polyhistidine- tagged protein per well.

Additional Information

Note: This system requires the use of the Vac-Man®^96 Vacuum Manifold or compatible vacuum manifold.

Reference

Engel, L. et al. (2005) HisLink™^ 96 Protein Purification System: Fast Purification of Polyhistidine-Tagged Proteins. Promega Notes 90 , 15–18.

4927M

B

Add FastBreak™ Cell Lysis/DNase I Solution and HisLink™ Resin to 1ml cell cultures in deep-well plate.

TTTransfer lysates andransfer lysates and HisLink™ Resin to filtration plate and apply vacuum. Filtration Plate

Elution Plate

Overnight cultures

Wash.

Elute protein.

Purified polyhistidine- or HQ-tagged proteins.

Figure 4.5. Flow diagram of polyhistidine-tagged protein purification using the HisLink ™^ 96 Protein Purification System.

Ordering Information HisLink™^ 96 Protein Purification System (Cat.# V3680, V3681)

Affi nity-based Protein Purification

4

PinPoint

™ Xa Protein Purifi cation System

Production and purification of fusion proteins that are biotinylated in E. coli.

  1. Wash.
  2. Elute with free biotin.

PinPoint™ Expression Vector

  1. Express fusion protein in E. coli.
  2. Lyse cells, digest with nuclease.
  3. Pellet cell debris. Biotinylated fusion protein in crude cell supernatant

Detection using avidin reagents

Proteolytic removal of biotinylated tag peptide

0367MC03_3A

Bind to SoftLink™ Soft Release Avidin Resin.

Figure 4.6. Schematic diagram of recombinant protein expression and purification using the PinPoint™^ Xa Protein Purification System.

Description and Principle

The PinPoint™^ Xa Protein Purification System is designed for the production and purification of fusion proteins that are biotinylated at the N-terminus in vivo. The DNA coding for the protein of interest is cloned into a PinPoint™^ Vector downstream of a sequence encoding a 14kDa peptide that becomes biotinylated in vivo. Biotinylated fusion proteins are produced in E. coli (JM109 and HB101 E. coli bacterial strains, or other strains without the birA mutation) and are affinity-purified using the SoftLink™^ Soft Release Avidin Resin. The PinPoint™^ Vectors feature the encoded endoproteinase Factor Xa, for proteolytic removal of the biotinylated peptide post-purification. The system contains 3 cloning vectors in multiple combinations of sense reading frames, an avidin- conjugated resin, Streptavidin-Alkaline Phosphatase, a purification column and biotin. The PinPoint™^ Xa Control Vector contains the chloramphenicol acetyl- transferase (CAT) gene and is provided as a means of monitoring protein expression, purification and processing conditions. The system generally yields 1–5mg of protein per liter of E. coli culture.

Features and Benefits

  • In vivo Biotinylation Tag: Allows purification of fusion proteins labeled with biotin.
  • Easy-to-Use: Purification of biotinylated proteins with the SoftLink™^ Resin can be performed by col- umn or batch purification.
  • Flexible: PinPoint™^ Vectors are supplied for all reading frames.
  • Gentle Release Conditions: SoftLink™^ Resin allows release of the fusion protein under nondenaturing conditions. Ordering Information PinPoint™^ Xa Protein Purification System (Cat.# V2020)

Affi nity-based Protein Purification

56 Discover Reliable Tools for Protein Analysis

4

56 Discover Reliable Tools for Protein Analysis

The use of magnetic beads for protein purification/pull- down provides a rapid and efficient method to extract and capture recombinant proteins from cell lysates and cell culture supernatant. Virtually all affinity chemistries discussed previously can be transferred on magnetic beads. There are many advantages of a magnetic approach:

  1. Easily process very small sample volumes. Proteins from volumes as low as 20μl can be processed with good efficiency and minimal target protein losses.
  2. Simple and cost effective approach that does not require extensive plumbing, chromatography instrumentation or centrifugation.
  3. Protein samples can be eluted into a minimal volume resulting in higher concentration of purified protein. This can be used for protein concentration purposes.
  4. Faster washing and elution steps because no centrifugation steps are required.
  5. More readily adapted for high-throughput applications on automated liquid-handling robots (Figure 4.7).
  6. Magnetic approach excels at parallel sample processing, where multiple samples need to be processed as fast as possible.

All previously discussed affinity chemistries (His, HaloTag ®^ GST) are available for protein capture in a magnetic bead format and are amenable to both protein purification and protein pull-down applications.

4.2 Magnetic Affinity-based Purification and

Pull-down Strategies

OVERVIEW

Figure 4.7. Magnetized beads in an Eppendorf tube during protein purification from small (μl) sample volumes (Panel A). Tecan automated liquid handler processing magnetic beads during high-throughput purification (Panel B).

10543TB

A.
B.

4

MPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMP

6544MB

TNT®-based Cell-Free Expression of Prey Protein

Cell Lysis

Bait expressed as GST Fusion in E.coli

Bind, Wash and Capture on MagneGST™^ Glutathione Particles

Mix and Allow Interaction to Occur

Gel Electrophoresis Followed By Detection (Western Blotting or Autoradiography)

Detect Prey Protein

Wash and Elute Complex

Plasmid Containing Protein Coding Sequence for Prey Protein

RNA Promoter

Prey SequenceSequenceSequence

GGGGGGGGGGGGGGGGGG SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS TTTTTTTTTTTTTTTT

BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

B - Bait Protein P - Prey Protein

GST - Glutathione S-transferase

MP - Magnetic Particle

GGGGGGGGGGGGGGGGGG SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS TTTTTTTTTTTTTTTT

BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

GGGGGGGGGGGGG SSSSSSSSSSSSSSSSSSSSSS TTTTTTTTTTTT

MPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMPMP BBBBBBBBBBBBBBBBBBBBBBBBBBBB PPPPPPPPPPPPPPPPPPPPPPPP

PPPPPPPPPPPPPPPPPPPPPPPPPPP

GGGGGGGGGGGGGGGG SSSSSSSSSSSSSSSSSSSSSSS TTTTTTTTTTTT

BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP

Figure 4.8. Schematic diagram of MagneGST™^ Protein Purification in combination with protein pull-down.

Magnetic Affi nity-based Protein Purifi cation

4

Magne

™ HaloTag

® Beads

Manual or automated high-throughput protein purification and pull-down of HaloTag ®^ fusion proteins from E. coli and mammalian cell cultures, at input

volumes from 20μl to 50ml.

Ordering Information Magne™^ HaloTag®^ Beads (Cat.# G7281, G7282)

Figure 4.9 Schematic diagram of the HaloTag®^ fusion purification protocol using Magne™^ HaloTag®^ Beads.

10441MA

Equilibrate Magne™ HaloTag®^ Beads.

Add lysate, and bindHaloTag®^ fusion protein to Magne™ HaloTag®^ Beads.

Wash.

Cleave protein bound to bead using HaloTEV Protease.

Elute purified protein.

HaloTag®^ protein

Fused protein (^) HaloTEV Protease

Description and Principle

The Magne™^ HaloTag®^ Beads provide a convenient method to covalently capture HaloTag®^ fusion proteins with magnetic particles for protein pull-downs and puri- fication. HaloTag ®^ fusion proteins may be expressed in cell-based and cell-free systems. Cell lysates are mixed with Magne ™^ HaloTag®^ Beads and HaloTag® fusion proteins bound covalently to the beads. These magnetic beads offer a high-binding capacity (≥20mg/ ml) for purifying HaloTag®^ fusion proteins with low nonspecific protein binding. After washing, the protein of interest can be released from the beads by TEV Protease cleavage (either HaloTEV or ProTEV) at the optimized TEV recognition site. Proteolytic release yields the protein of interest, while the HaloTag®^ protein and HaloTEV Protease remain covalently attached to the beads (Figure 4.9).

Features and Benefits

  • Simple: No centrifugation or vacuum is required once the cells are lysed.
  • High Recovery: Binding capacity ≥20mg of purified HaloTag®^ fusion protein per ml of settled particles.

References

Verger A. et.al. (2013) The Mediator complex subunit MED25 is targeted by the N-terminal transactivation domain of the PEA3 group members. Nucl. Acids Res. 41 (9), 4847–59. Yoshida S. et al. (2013) Androgen receptor promotes sex-independent angiogenesis in response to ischemia and is required for activation of vascular endothelial growth factor receptor signaling. Circulation 2 (128), 60–71. Nagaki K. et al. (2012) Isolation of centromeric-tandem repetitive DNA sequences by chromatin affinity purification using a HaloTag7-fused centromere-specific histone H3 in tobacco. Plant Cell Rep. 31 (4), 771–9.

Magnetic Affi nity-based Protein Purifi cation

4

Maxwell

® 16 Polyhistidine Protein

Purifi cation Kit

Automated purification of polyhistidine-tagged proteins from bacterial cultures and

mammalian and insect proteins.

Description and Principle

The Maxwell®^ 16 Polyhistidine Protein Purification Kit consists of cartridges prefilled with MagneHis™^ Ni-Particles and buffers that are used with the Maxwell®^ 16 Instrument to provide an easy method for efficient, automated purification of polyhisti- dine-tagged protein from various cells (Table 4.2). The Maxwell®^ Instrument is supplied with a preprogrammed purification procedure and reagent cartridges specifically designed to maximize simplicity and convenience. The instrument can process up to 16 samples in approximately 40 minutes.

Ordering Information Maxwell®^ 16 Polyhistidine Protein Purification Kit (Cat.# AS1060)

Features and Benefits

  • Save Hands-On Time: Prefilled cartridges eliminate reagent preparation, multiple pipetting steps, centrifu- gation and additional sample manipulation.
  • Consistent Results: Across all samples.

5933MA

Label side

Ridge side

Lysis Buffer

Wash Buffer Wash Buffer Wash Buffer Wash Buffer Empty

Sample

Plunger

Contents (^) User Adds:

MagneHis™ Ni-Particles

Figure 4.12. Maxwell 16®^ Polyhistidine Protein Purification Sample Cartridge

Figure 4.11. The Maxwell®^16 Instrument uses paramagnetic-particle technology to extract DNA, RNA or protein from up to 16 samples in less than 45 minutes. The paramagnetic particles and reagents are supplied in prefilled cartridges for faster separa- tions with less hands-on time.

Magnetic Affi nity-based Protein Purifi cation

Table 4.2. Sample Types and Maximum Processing Capacity per Cartridge.

Sample Type Processing Capacity Bacterial Culture Up to 20 O.D. 600 Mammalian Cell Culture Cells Up to 5 x 10

(^6) cells

Insect Cell Culture Cells Up to 5 x 10^6 cells Mammalian or Insect Cell Culture Medium 1ml

4

Magnetic Separation Devices

Manual or automated protein purification using magnetic particles.

Description

Promega offers a wide range of magnetic devices for separations from 0.5ml microcentrifuge tubes to 15ml or 50ml conical tubes, to 96- and 384-well standard and deep-well plates. The magnetic separation device for plates is useful for both manual and automated liquid-handling.

MagneSphere®^ Technology Magnetic

Separation Stands

MagnaBot®^ Magnetic Separation Devices

2312TA07_8A^ 3993TA02_3A MagneSphere®^ Technology Magnetic Separation Stand (two-position). Up to two sample volumes (50μl –1.0ml). Left to Right: Cat.# Z5331, Z5332, Z5333.

MagnaBot®^ 96 Magnetic Separation Device for 96-well standard- or deep-well-plates (20μl– 1.0ml). Cat.# V8151.

2309TA07_8A MagneSphere®^ Technology Magnetic Separation Stand (twelve-position). Up to two sample volumes (50μl–1.0ml). Left to Right: Cat.# Z5341, Z5342, Z5343.

2311TA07_8A

3417TA05_1A

PolyATtract®^ System 1000 Magnetic Separation Stand. One Sample volume (1-50ml). Cat.# Z5410.

MagnaBot ®^ 384 Magnetic Separation Device. Cat.# V8241.

MagnaBot ®^ II Magnetic Separation Device for 96-well PCR plate. Cat.# V8351.

Magnetic Separation Devices