Solved Problem Set 5 - Bio Ocean | OCEAN 430, Assignments of Geology

Material Type: Assignment; Class: BIO OCEAN; Subject: Oceanography; University: University of Washington - Seattle; Term: Autumn 2008;

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Problem Set # 5 Answer Key Puget Sound Benthos
OCEAN 430 Fall 2008 Due: In class, 10 November 2008
Please answer the following questions on a separate sheet of paper. You should read the
assigned reading (Nichols 2003) and try to complete as much of Question 1 as you can before
class on Thursday to assist you in answering Question 3, and to enable a lively discussion of the
paper.
1. (20 points) Answer the following questions about the assigned Nichols (2003) paper.
a) (1 point) Rewrite the title of the paper in less-technical terms.
Changes in deep sea animal communities over multiple decades in the Puget
Sound.
b) (2 points) State the scientific goal(s) of the Nichols (2003) study, and briefly
summarize the rationale for the work.
Used long term sampling of the benthos at a single deep site to investigate
stability in the community composition and abundance. This type of study had not
(and still has not) been conducted frequently, so we have very little baseline
information about how benthic communities change over time in the absence of
disturbance, which makes it difficult to determine causality when disturbances like
climate change and eutrophication do occur.
c) (1 point) What characters/features/variables have historically been used to describe
benthic communities?
water depth, salinity, and sediment particle size.
d) (2 points) Describe the sampling site FHN2, and briefly explain why the site was
chosen for this study. How often was the site usually sampled? How many
replicates were usually taken?
Sampling site FHN2 is offshore of Seattle, located at a water depth of 230m on a
large mud flat at the southern end of the Main Basin. The sediment is characterized
by fine soft mud and the seawater generally flows south. FHN2 was chosen because
of these physical features and proximity to Seattle. The site was sampled biannually,
in spring and fall, and three replicates were usually taken.
e) (1 points) Sketch the benthic invertebrate sampling device used in this study. If the
area sampled were square, what would the lengths of the sides be?
Sqrt(0.1) = 0.32m = 32 cm ~ 1 foot
f) (2 points) A statistical test called the Pearson correlation coefficient was employed to
evaluate whether variations of benthic invertebrate abundance changed over time, or
were correlated to other measured factors. What significance level was used by
Nichols (2003) to determine statistical significance? Besides time, what other types
of data were examined for potential correlations with changes in benthic community
composition and abundance?
Significance levels (alpha) of 0.05 (5%) and 0.01 (1%) were used. Wet weight,
abundance, secchi depth, temperature, Biological Oxygen Demand, English sole
catch.
g) (2 points) A statistical test called a Student's t-test was employed to test the
significance of variations of benthic invertebrate biomass. Calculate the probability
associated with the t-test testing a difference in Molpadia biomass between samples in
the table below. (No need to show the math, but note which program and function
you used to calculate the value.) Is the difference significant at p < 0.05?
pf3
pf4

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OCEAN 430 Fall 2008 Due: In class, 10 November 2008 Please answer the following questions on a separate sheet of paper. You should read the assigned reading (Nichols 2003) and try to complete as much of Question 1 as you can before class on Thursday to assist you in answering Question 3, and to enable a lively discussion of the paper.

1. (20 points) Answer the following questions about the assigned Nichols (2003) paper. a) (1 point) Rewrite the title of the paper in less-technical terms.

  • Changes in deep sea animal communities over multiple decades in the Puget Sound. b) (2 points) State the scientific goal(s) of the Nichols (2003) study, and briefly summarize the rationale for the work.
  • Used long term sampling of the benthos at a single deep site to investigate stability in the community composition and abundance. This type of study had not (and still has not) been conducted frequently, so we have very little baseline information about how benthic communities change over time in the absence of disturbance, which makes it difficult to determine causality when disturbances like climate change and eutrophication do occur. c) (1 point) What characters/features/variables have historically been used to describe benthic communities?
  • water depth, salinity, and sediment particle size. d) (2 points) Describe the sampling site FHN2, and briefly explain why the site was chosen for this study. How often was the site usually sampled? How many replicates were usually taken?
  • Sampling site FHN2 is offshore of Seattle, located at a water depth of 230m on a large mud flat at the southern end of the Main Basin. The sediment is characterized by fine soft mud and the seawater generally flows south. FHN2 was chosen because of these physical features and proximity to Seattle. The site was sampled biannually, in spring and fall, and three replicates were usually taken. e) (1 points) Sketch the benthic invertebrate sampling device used in this study. If the area sampled were square, what would the lengths of the sides be?
  • Sqrt(0.1) = 0.32m = 32 cm ~ 1 foot f) (2 points) A statistical test called the Pearson correlation coefficient was employed to evaluate whether variations of benthic invertebrate abundance changed over time, or were correlated to other measured factors. What significance level was used by Nichols (2003) to determine statistical significance? Besides time, what other types of data were examined for potential correlations with changes in benthic community composition and abundance?
  • Significance levels (alpha) of 0.05 (5%) and 0.01 (1%) were used. Wet weight, abundance, secchi depth, temperature, Biological Oxygen Demand, English sole catch. g) (2 points) A statistical test called a Student's t-test was employed to test the significance of variations of benthic invertebrate biomass. Calculate the probability associated with the t-test testing a difference in Molpadia biomass between samples in the table below. (No need to show the math, but note which program and function you used to calculate the value.) Is the difference significant at p < 0.05?
  • p = 0.12 (openoffice.org TTEST with 2 samples of equal variance). 0.12 > 0. so it is not significant. h) (2 points) What is clustering analysis? How was it used in this study?
  • Clustering is the classification of data into groups sharing common traits. In this study it was applied to several versions of the species lists to examine the community relatedness over time. i) (2 points) Describe the long-term pattern and trends for one of the following between 1963 and 1992:
  • benthic invertebrates
  • fish catch
  • water quality in the Puget Sound
  • various answers as long as important time periods and quantitative measures were specified j) (2 points) What factors may be associated with the observed benthic community change?
  • climate change, water quality, and influence of larger fauna (e.g. English sole). k) (3 points) Of the factors you listed, which do you suspect is most likely responsible for the observed change in the benthic community? Which data in the Nichols (2003) paper supports this hypothesis?
  • Various as long as supported by data
  1. (25 points) This problem is an opportunity for you to apply to Puget Sound the lessons you've learned in class and the skills you've developed in the previous problem sets. Imagine you are an oceanographer hired by Washington State to help identify and manage emerging problems throughout the Sound. The state is investing in you, and your report will give taxpayers insight into how Puget Sound functions as well as valuable suggestions to address some of the region's emerging problems. It is very important to present your thoughts clearly. Here is your problem: Rapid population growth in the Puget Sound lowlands has created the demand for larger and more efficient wastewater treatment plants. In 1958, voters in Seattle and King County created Metro, an agency charged with developing and operating a regional wastewater treatment system. In 1966, construction of the primary treatment plant was completed at West Point, a site located near Discovery Park, four miles northwest of downtown Seattle. In 1991, to comply with the 1972 federal Clean Sample 1 Sample 2 51 55 57 69 56 65 47 66 62 56 49 58 59 55 65 58 52 57 55 54
  1. (5 points) Leave this space blank for a quick-write essay to be written and turned in at the beginning of class on Thursday relating to the conclusions of the Nichols (2003) paper. Please be on time. You will benefit from having read the paper and answered as many of the questions in Question 1 as possible.