Genetics Problem Set 4: Understanding Genotypes, Alleles, and DNA Replication - Prof. Amy , Assignments of Biology

A problem set from a genetics course focusing on mendel's laws, chromosomal inheritance, and linkage, as well as dna replication. Students are asked to solve various problems related to genotypes, alleles, and the behavior of genes in diploid organisms. The problems cover topics such as the relationship between genotype and phenotype, the number of alleles in a population, the probability of specific genotypes and phenotypes, and the linkage and mapping of genes.

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Pre 2010

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Problem Set 4 BILD1 / Spring 2009
Chapters 14-16 Dr. Kiger
Genetics: Mendel’s Laws
1) Organisms with different genotypes can have the same phenotype! Is this statement true or false? Explain why.
TRUE. Dominant alleles carried in individuals with either homozygous or heterozygous genotypes could
result in identical phenotypes.
2) (a) In a diploid organism, how many different alleles at a single locus can that organism possess?
TWO.
(b) How many different alleles of a particular gene can be found in a population of organisms?
MANY/UNLIMITED.
(c) If there are 4 alleles that can occupy a single locus in a diploid organism, how many total different
genotypes are possible? ex. : A a å a
TEN. AA, Aa, Aå, Aa, aa, aå, aa, åå, åa, aa
(d) Continuing with part (c), suppose that one of the four alleles is dominant over all the others. Further
suppose that the other three alleles produce identical phenotypes either when mixed with each other, or when
homozygous. Assign a phenotype to the genotypes you produced in part (c). How many different phenotypes
are possible?
TWO. Dominant phenotype (AA, Aa, Aå, Aa) and recessive phenotype (aa, aå, aa, åå, åa, aa).
3) The gene specifying blood group determinants can occur in three alleles: A, B and O. A and B are codominant,
while O is recessive. If Luke Skywalker’s mother was blood type A and Luke himself were type B, what blood type(s)
– if any – would DarthVader have to be to unequivocally rule him out as Luke’s natural father?
Darth Vader could not be his father if blood type A (AA or AO) or O (OO).
(Mom is AA or AO. Luke must be BO. Darth Vader can only be AB or BO.)
4) Cystic fibrosis is inherited as a simple autosomal recessive in humans. If a woman who is a carrier marries a
man who is normal and not carrying the trait, what percent of their children would be expected to have the disease?
NONE.
5) Brown eye color is dominant in humans; blue is recessive. If a brown-eyed man marries a blue-eyed woman
and they have a brown-eyed boy and a blue-eyed girl, we can confidently conclude:
(a) the man is not the true father of one of the children
(b) the man is heterozygous
(c) eye color is sex-linked
(d) both parents are homozygous
6) Brown eyes (B) are dominant to blue eyes (b). A blue-eyed man, both of whose parents had brown eyes,
married a brown-eyed woman whose father was blue-eyed and whose mother was brown-eyed. This man and woman
have a blue-eyed child.
(a) What are the genotypes of all the individuals mentioned?
The blue-eyed man’s pedigree: Bb x Bb bb
The brown-eyed woman’s pedigree: bb x B(B or b) Bb bb (blue-eyed child)
(b) What is the probability that their next child will also have blue eyes ? brown eyes?
50% blue-eyed, 50% brown-eyed.
7) The a locus in maize affects anthocyanin biosynthesis such that colored kernels result when plants contain one
or more dominant alleles of the locus. Another gene sh, affects starch biosynthesis. Plants homozygous recessive for sh
produce kernels that are shriveled like a raisin. The genes for a and sh are on chromosomes 4 and 9, respectively. If a
plant heterozygous for seed color and shape is self pollinated and one ear produced 496 kernels:
(a) How many kernels do you expect to be colorless and shriveled?
31, or 1/16 of 496 (a a, sh sh)
(b) How many kernels do you expect to be colored and shriveled?
93, or 3/16 of 496 (A a, sh sh)
8) Chapter 14, p. 284-285, Problems #1-19. [Should be familiar with pedigrees (#16) .]
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Chapters 14- 16 Dr. Kiger

Genetics: Mendel’s Laws

  1. Organisms with different genotypes can have the same phenotype! Is this statement true or false? Explain why. TRUE. Dominant alleles carried in individuals with either homozygous or heterozygous genotypes could result in identical phenotypes.
  2. (a) In a diploid organism, how many different alleles at a single locus can that organism possess? TWO. (b) How many different alleles of a particular gene can be found in a population of organisms? MANY/UNLIMITED. (c) If there are 4 alleles that can occupy a single locus in a diploid organism, how many total different genotypes are possible? ex. : A a å a TEN. AA, Aa, Aå, A a , aa, aå, a a , åå, å a , aa (d) Continuing with part (c), suppose that one of the four alleles is dominant over all the others. Further suppose that the other three alleles produce identical phenotypes either when mixed with each other, or when homozygous. Assign a phenotype to the genotypes you produced in part (c). How many different phenotypes are possible? TWO. Dominant phenotype (AA, Aa, Aå, A a ) and recessive phenotype (aa, aå, a a , åå, å a , aa ).
  3. The gene specifying blood group determinants can occur in three alleles: A, B and O. A and B are codominant, while O is recessive. If Luke Skywalker’s mother was blood type A and Luke himself were type B, what blood type(s)
  • if any – would DarthVader have to be to unequivocally rule him out as Luke’s natural father? Darth Vader could not be his father if blood type A (AA or AO) or O (OO). (Mom is AA or AO. Luke must be BO. Darth Vader can only be AB or BO.)
  1. Cystic fibrosis is inherited as a simple autosomal recessive in humans. If a woman who is a carrier marries a man who is normal and not carrying the trait, what percent of their children would be expected to have the disease? NONE.
  2. Brown eye color is dominant in humans; blue is recessive. If a brown-eyed man marries a blue-eyed woman and they have a brown-eyed boy and a blue-eyed girl, we can confidently conclude: (a) the man is not the true father of one of the children (b) the man is heterozygous (c) eye color is sex-linked (d) both parents are homozygous
  3. Brown eyes (B) are dominant to blue eyes (b). A blue-eyed man, both of whose parents had brown eyes, married a brown-eyed woman whose father was blue-eyed and whose mother was brown-eyed. This man and woman have a blue-eyed child. (a) What are the genotypes of all the individuals mentioned? The blue-eyed man’s pedigree: Bb x Bb  bb The brown-eyed woman’s pedigree: bb x B(B or b)  Bb  bb (blue-eyed child) (b) What is the probability that their next child will also have blue eyes? brown eyes? 50% blue-eyed, 50% brown-eyed.
  4. The a locus in maize affects anthocyanin biosynthesis such that colored kernels result when plants contain one or more dominant alleles of the locus. Another gene sh , affects starch biosynthesis. Plants homozygous recessive for sh produce kernels that are shriveled like a raisin. The genes for a and sh are on chromosomes 4 and 9, respectively. If a plant heterozygous for seed color and shape is self pollinated and one ear produced 496 kernels: (a) How many kernels do you expect to be colorless and shriveled? 31, or 1/16 of 496 (a a, sh sh) (b) How many kernels do you expect to be colored and shriveled? 93, or 3/16 of 496 (A a, sh sh) 8 ) Chapter 14, p. 284-285, Problems #1-19. [Should be familiar with pedigrees (#16).]

Chapters 14- 16 Dr. Kiger

Genetics: Chromosomal Inheritance and Linkage

  1. The crossing over frequency between genes A and B is 7%; between B and C is 17%; between A and C, 10%; between C and D, 1%; and between B and D, 18%. What is the frequency of crossing-over between A and D? 11% B---7%---A-----10%----C-1%-D
  2. A haploid alga can normally utilize acetate as a carbon source for growth. A mutant was found that could not utilize acetate and also required tryptophan. The double mutant (at) was crossed with a normal alga (AT) with the resultant progeny: AT 48 at 52 At 49 Ta 51 (a) Do the genes appeared linked or unlinked? How do you know? Unlinked. The recombination frequency is ~50% (At or Ta). Another mutant was obtained that required biotin for growth (b). When the double mutant (ab) was crossed to the wildtype alga (AB), the following progeny were obtained: AB 129 Ab 13 ab 141 aB 17 (b) Are these genes linked or unlinked? How many map units apart are they? Linked, since recombination frequency is <50%. The acetate (a) and biotin (b) loci are ~10 map units apart. [30 recombinant (Ab and aB) / 300 total offspring, or 10% recombination frequency, or 10 map units]
  3. What is a sex-linked trait? A gene located on a sex chromosome (in humans, usually refers to gene on X chromosome)
  4. Color-blindness is a sex-linked disease (B=normal, b=color blind). A color-blind male has children by a normal female. They have a color-blind son and a normal daughter. (a) Indicate the genotypes of the parents and the offspring. Dad is bY (with b on X chromosome) Mom is Bb Son is bY; Daughter is Bb. (b) If the above daughter later had a son of her own, what are the chances that her son would be normal? 50% chance normal son (BY). (13) Chapter 15, p. 303-304, Problems #1-15.

Chapters 14- 16 Dr. Kiger

  1. Draw a diagram of the DNA replication fork. Point out where the following things are likely located: (a) the leading strand (b) the lagging strand (c) all of the 5’ and 3’ ends (d) Helicase (e) Primase (f) Okazaki fragments (g) Ligase (h) DNA polymerase III (i) DNA Polymerase I (j) Single-strand binding protein (SSBP) (19) Chapter 16, p. 324, Problems #1-8.

SSBP

Helicase