structure of plasmids, Lecture notes of Microbiology

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SEM : SEMESTER - III
SUB : MICROBIAL GENETICS
CLASS : II- M . Sc MICROBIOLOGY
PRINCE SHRI VENKATESHWARA ARTS AND SCIENCE COLLEGE
GOWRIVAKKAM,
CHENNAI- 600073.
Faculty : Dr . S . Gayathri Devi
Topic : Structure of Plasmids
Aim : Outline the utility of plasmids
DEPARTMENT OF MICROBIOLOGY
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SEM : SEMESTER - III SUB : MICROBIAL GENETICS CLASS : II- M. Sc MICROBIOLOGY

PRINCE SHRI VENKATESHWARA ARTS AND SCIENCE COLLEGE GOWRIVAKKAM, CHENNAI- 600073.

Faculty : Dr. S. Gayathri Devi Topic : Structure of Plasmids Aim : Outline the utility of plasmids

DEPARTMENT OF MICROBIOLOGY

Plasmids

Structure of a plasmid

 There are three important structure that make up a plasmid,

  1. Origin of replication
  2. Restriction sites or multiple cloning site
  3. Selectable marker

Origin of replication(ORI)

 The ORI is the place where DNA replication begins, enabling a plasmid to reproduce itself as it must to survive within cells.

Origin of replication

Restriction sites

Selectable markers

 Selectable markers are often antibiotic resistance genes ; bacteria that have been subjected to a procedure to introduce foreign DNA are grown on a medium containing an antibiotic, and those bacterial colonies that can grow have successfully taken up and expressed the introduced genetic material.

 Plasmids almost always carry at least one gene.

 Many of the genes carried by a plasmid are beneficial for the host cells, for example: enabling thehost cell to survive in an environment that would otherwise be lethal or restrictive for growth.

 Some of these genes encode traits for antibiotic resistance or resistance to heavy metal, while othersmay produce virulence factors that enable a bacterium to colonize a host and overcome its defences, or have specific metabolic functions that allow the bacterium to utilize a particular nutrient, including the ability to degrade recalcitrant or toxic organic compounds.

 Plasmids can also provide bacteria with the ability to fix nitrogen.

 Some plasmids, have no observable effect on the phenotype of the host cell or its benefit to the hostcells cannot be determined, and these plasmids are called cryptic plasmids.

Properties and characteristics cont..

  • Naturally occurring plasmids vary greatly in their physical properties.
  • Their size can range from very small mini-plasmids of less than a 1 kilobase pairs (Kbp), to very large megaplasmids of several megabase pairs (Mbp).
  • Plasmids are generally circular, however examples of linear plasmids are also known.
  • Plasmids may be present in an individual cell in varying number, ranging from one to several hundreds.
  • The normal number of copies of plasmid that may be found in a single cell is calledthe copy number, and is determined by how the replication initiation is regulated and the size of the molecule.
  • Larger plasmids tend to have lower copy numbers.

Properties and characteristics cont..

Types of plasmid (based on function)

Fertility F-plasmids , which contain tra genes. They are capable of conjugation and result in the expression of sex pilli.  Resistance plasmids , which contain genes that provide resistance against antibiotics or poisons.  Col plasmids , which contain genes that code for bacterial toxins(colicins) that can kill other bacteria.  Degradative plasmids , which enable the digestion of unusual substances, e.g. toluene and salicylic acid.  Virulence plasmids , which turn the bacterium into a pathogen, e.g. Ti plasmid.

Applications

 Plasmids are the most-commonly used bacterial cloning vectors.

 Protein production

 Gene therapy

Application - cloning

  • Plasmids are the most-commonly used bacterial cloning vectors.
  • These cloning vectors contain a site that allows DNA fragments to be inserted, for examplea multiple cloning site or polylinker which has several commonly used restriction sites to which DNA fragments may be ligated.
  • After the gene of interest is inserted, the plasmids are introduced into bacteria by a process called transformation.
  • These plasmids contain a selectable marker, usually an antibiotic resistance gene, which confer on the bacteria an ability to survive and proliferate in a selective growth medium containing the particular antibiotics.
  • The cells after transformation are exposed to the selective media, and only cells containingthe plasmid may survive.
  • In this way, the antibiotics act as a filter to select only the bacteria containing the plasmidDNA.