Developmental Biology, Stem Cells & Aging, Slides of Developmental biology

Developmental Biology, Stem Cells & Aging. Please check the University of Washington Time Schedule for the most updated course information.

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2022/2023

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2021-2022 MCB Area of Interest Course Information
Developmental Biology, Stem Cells & Aging
Please check the University of Washington Time Schedule for the most updated course information.
FOUNDATIONAL COURSES
Foundational Course One:
Course Number: CONJ 542
Course Title: Cell Biology of Development
Instructor (s): Dave Raible, Celeste Berg
Location (e.g. UW, FH, SLU): UW
Credits: 3
Quarter, Weeks, and Frequency course is offered: Autumn, weeks 1-10, even years
Attributes (e.g., graded, lecture-based): lecture and literature review
Sub Area (if applicable): Development
Synopsis: The course will focus on four topics that reveal how molecular processes within
individual cells are coordinated across tissues to build structures. The instructors will introduce
each topic through an explanatory lecture and then devote four sessions to the discussion of key
papers in the field. The topics are:
1. How cytoskeletal and motor proteins create tensile forces that change cell shapes and
alter tissue structures
2. How apical-basal polarity within cells contributes to the establishment and maintenance
of tissue architecture
3. How differential adhesion facilitates construction of tissue types and the movement of
cells within and through tissue layers
4. How these cell biological characteristics combine to influence tissue morphogenesis
Foundational Course Two:
Course Number: MCB 522
Course Title: The Developmental Basis of Human Disease
Instructor (s): Cecilia Moens
Location: FH
Credits: 3.0
Quarter, Weeks, and Frequency course is offered: Autumn, weeks 1-10, odd years
Attributes: lecture and literature review
Sub Area (if applicable): Development
Synopsis: Rapid advances in human genetics have identified a host of new genes associated with
rare human genetic disorders. In many cases, the functions of these genes have already been
elucidated by developmental and cell biologists working in non-human model systems. This
ten-week course will explore the intimate relationship between developmental biology and
human disease, including both inherited genetic disorders and cancer. Each week we will choose
a different human disorder whose underlying genetic cause has been discovered. We will then
discuss how the causal gene or genetic pathway controls normal animal development. The
second meeting of each week will be an opportunity for students to present papers from the
literature to uncover specific mechanistic links between normal developmental gene functions
and disease.
Foundational Course Three:
Course Number: CONJ 530
Updated Sept. 2021
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2021-2022 MCB Area of Interest Course Information

Developmental Biology, Stem Cells & Aging

Please check the University of Washington Time Schedule for the most updated course information.

FOUNDATIONAL COURSES

Foundational Course One: Course Number: CONJ 542 Course Title: Cell Biology of Development Instructor (s) : Dave Raible, Celeste Berg Location (e.g. UW, FH, SLU) : UW Credits : 3 Quarter, Weeks, and Frequency course is offered : Autumn, weeks 1-10, even years Attributes (e.g., graded, lecture-based) : lecture and literature review Sub Area (if applicable) : Development Synopsis : The course will focus on four topics that reveal how molecular processes within individual cells are coordinated across tissues to build structures. The instructors will introduce each topic through an explanatory lecture and then devote four sessions to the discussion of key papers in the field. The topics are:

  1. How cytoskeletal and motor proteins create tensile forces that change cell shapes and alter tissue structures
  2. How apical-basal polarity within cells contributes to the establishment and maintenance of tissue architecture
  3. How differential adhesion facilitates construction of tissue types and the movement of cells within and through tissue layers
  4. How these cell biological characteristics combine to influence tissue morphogenesis Foundational Course Two: Course Number : MCB 522 Course Title : The Developmental Basis of Human Disease Instructor (s) : Cecilia Moens Location : FH Credits : 3. Quarter, Weeks, and Frequency course is offered : Autumn, weeks 1-10, odd years Attributes : lecture and literature review Sub Area (if applicable) : Development Synopsis : Rapid advances in human genetics have identified a host of new genes associated with rare human genetic disorders. In many cases, the functions of these genes have already been elucidated by developmental and cell biologists working in non-human model systems. This ten-week course will explore the intimate relationship between developmental biology and human disease, including both inherited genetic disorders and cancer. Each week we will choose a different human disorder whose underlying genetic cause has been discovered. We will then discuss how the causal gene or genetic pathway controls normal animal development. The second meeting of each week will be an opportunity for students to present papers from the literature to uncover specific mechanistic links between normal developmental gene functions and disease. Foundational Course Three: Course Number : CONJ 530 Updated Sept. 2021

Course Title: Directing Stem Cells Toward Regenerative Medicine Instructor (s): Hannele Ruohola-Baker Location : SLU Credits : 3. Quarter, Weeks, and Frequency course is offered : Winter, weeks 1-10, odd years Attributes : lecture and literature review Sub Area (if applicable) : Stem Cells Synopsis : In this class we will discuss three topics: the recent findings on adult and embryonic stem cell classes and their niches, on epigenetic control of stem cells and stem cells in human disease. Learning objectives: After this class, the students should have a solid foundation on stem cell biology, epigenetic analysis and regulation of stem cells and human diseases connected to stem cell biology. Foundational Course Four: Course Number: PATH 517 Course Title : The Biology and Pathology of Aging Instructor (s): Jonathan An and Alex Mendenhall Location : UW Credits : 3 Quarter, Weeks, and Frequency course is offered : Winter, weeks 1- Attributes : lecture and literature review Sub Area (if applicable) : Aging Synopsis : The students focus on learning about aging, either centered around the hallmarks of aging or some contemporary topic in aging. Students attend or listen to prerecorded lectures, discuss the topic of the lecture in class, perform peer review of a related paper, and discuss the peer review in groups. The peer review model we use is the eLife peer review model.

ELECTIVE COURSES

Elective Course One: Course Number : FHL/BIOL 536 Course Title : Comparative Invertebrate Embryology Instructor(s) : Billie Swalla and Andreas Heyland Location : UW/Friday Harbor Labs Credits : 5. Quarter, Weeks, and Frequency course is offered : Summer, weeks 1- Attributes : Practical course, Literature and Methods Sub Area (if applicable) : Synopsis : Comparative Invertebrate Embryology will use hands-on lab experience to introduce students to the great diversity of developmental modes and processes found among marine invertebrates. The course will bridge cell and molecular approaches with ecological and evolutionary approaches to provide an integrated view of animal development. The course is intended to serve both biologists who wish to understand diversity in modes of development for ecological and evolutionary studies, and cell and developmental biologists who wish to broaden their knowledge of embryos beyond the standard model systems. Elective Course Two: Course Number : BIOL Course Title : Molecular Genetics of Plant Development Instructor(s) : Takato Imaizumi Updated Sept. 2021

Synopsis : Introduces the major themes in research in the biology of neoplastic change. Covers principle molecular mechanisms responsible for tumor initiation and progression, with a specific emphasis on intracellular signaling, DNA repair, cell cycle checkpoints, and loss of normal tissue homeostasis. The latest state of the art research in Cancer Biology will be presented by invited scientists, experts in their relevant field. The discussion meetings will concentrate on selected major papers in cancer biology and be presented and discussed by the students with help and guidance of the instructors. Elective Course Six: Course Number : BIOL 519 Course Title : Data Science for Biologists Instructor(s) : Brunton Location : UW Credits : 4. Quarter, Weeks and frequency: Winter, weeks 1- Attributes : Sub Area (if applicable) : Synopsis : Explores, analyzes, and visualizes biological data sets using scientific computing software. Focuses on the foundations of data wrangling, data analysis, and statistics, particularly the development of automated techniques that are reproducible and scalable to large data sets. Automated techniques are useful for image analysis because cells/tissues change shape during development; e.g., morphometric analysis.

GENERAL METHODS/PROFESSIONAL DEVELOPMENT (GM/PD) COURSES

GM/PD Course One: Course Number : UCONJ 510 Course Title : Introductory Laboratory Based Biostatistics Instructor (s) : Lloyd Mancl Location : UW Credits : 2. Quarter, Weeks, and Frequency course is offered : Summer Attributes : Lecture-based with assignments Sub Area (if applicable) : Synopsis : Introduces methods of data description and statistical inference for experiments. Covers principles of design and analysis of experiments; descriptive statistics; comparison of group means and proportions; linear regression; and correlation. Emphasizes examples from laboratory-based biomedical sciences, and provides demonstrations using standard statistical programs. GMPD Course Two: Course Number : MCB 533 Course Title : How to give a scientific seminar Instructor(s) : Jihong Bai Location : FH Credits : 1. Quarter, Weeks, and Frequency course is offered : Winter, weeks 1-5, will be offered in 2023 Attributes : Career development and methods Sub Area (if applicable) : Updated Sept. 2021

Synopsis : A crucial part of a scientific career is the ability to effectively deliver a research seminar. This course will focus on all aspects of giving a seminar and teach students how to introduce the research topic, how to make clear and effective slides, and how to explain methods and data in a clear manner. Students will prepare their own research seminar throughout the course. Each week they will practice a part of it and receive feedback from other students and the instructors. By the end of the course, students will have an entire seminar about their thesis project prepared. The course will also give examples of good and bad seminars and help students learn how to communicate with non-scientists about their research. GM/PD Course Three: Course Number : MCB 543 Course Title : Logic Constructs and Methodologies of Biological Research Instructor(s) : Sandra Bajjalieh Location : UW Credits : 3. Quarter, Weeks, and Frequency course is offered : Spring, weeks 1-10, will be offered in 2022 Attributes : Career development and methods Sub Area (if applicable) : Synopsis : This course surveys the logic and methods of scientific practice from historical, practical, and sociological points of view. Topics covered include how the philosophy of science influences experimental approaches, how the demarcation between science and pseudoscience has evolved, how common cognitive biases lead to errors in judgement and interpretation, and how sociological factors impact scientific progress. GM/PD Course Four: Course Number : MCB 560 Course Title : MCB Biotechnology Externship Instructor(s) : Nina Salama Location : TBA Credits : 2. Quarter, Weeks, and Frequency course is offered : Summer, weeks 1- Attributes : Career development and methods Sub Area (if applicable) : Synopsis : This externship program provides MCB students with the opportunity to gain firsthand research experience in biotechnology companies in the Puget Sound area. Applications are available in the early spring and reviewed by the Externship Program Director. Applications are submitted to participating companies to find a suitable match. This externship is only available during the summer between Year 1 and Year 2 to students who have completed 3 rotations and identified a dissertation laboratory. Students are supported by MCB for the summer quarter. Updated Sept. 2021