DNA Replication: Mechanisms, Enzymes, and Differences in Prokaryotes and Eukaryotes, Lecture notes of Biochemistry

DNA REPLICATION

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2015/2016

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DNA Replication
“Replication“ is the process in which each strand of the
original double-stranded DNA molecule serves as
template for the reproduction of the complementary
strand.
Two identical DNA molecules have been produced from
a single double-stranded DNA molecule
Characteristics
Semi-conservative
Bi-directional
Iniatiates at specifics origins
Catalyzed by DNA polymerases
DNA Replication-Correlate with Cell Cycle
DNA replication occurs in the nucleus during S phase of
eukaryotic cell cycle
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DNA Replication

“Replication“ is the process in which each strand of the

original double-stranded DNA molecule serves as

template for the reproduction of the complementary

strand.

Two identical DNA molecules have been produced from

a single double-stranded DNA molecule

Characteristics

Semi-conservative

Bi-directional

Iniatiates at specifics origins

Catalyzed by DNA polymerases

DNA Replication-Correlate with Cell Cycle

DNA replication occurs in the nucleus during S phase of

eukaryotic cell cycle

The two identical sister chromatids separate during

mitosis when cell divide.

Prokaryotic and Eukaryotic Replication

Prokaryotic DNA is a closed circular double stranded

molecule with single origin of replication

Eukaryotic DNA is a long linear molecule with multiple

origins of replication

DNA POLYMERASE

Enzymes that synthesize nucleic acids by formingphosphodiester bonds

PROKARYOTIC DNA POLYMERASE: DNA Polymerase I, DNAPolymerase III

EUKARYOTIC DNA POLYMERASE:

DNA polymerase α synthesizes lagging strand

Origin of Replication

Recognition of Origin of Replication

Ori C is recognized and bound by dna A Protein

The parental strands of DNA are pulled apart

A replication bubble is created

Unwinding of double helix

Unwinding of parental strands is brought about by action of Helicase

Helicases break Hydrogen bonds holding the two strands of DNA usingenergy from ATP

The two strands begin unwinding and form two replication forks

Stabilization of single stranded DNA

Single stranded DNA binding proteins (SSB) bind to each of the singlestranded DNA molecule

SSB stabilize, preventing them from re-associating.

SSB prevents the single strands from degradation by nucleases

Two types of DNA strands are synthesized Leading strand Lagging strand

LEADING AND LAGGING STRANDS

Leading strand is synthesized continuously as one long, singlepiece

Lagging strand is synthesized discontinuously as series ofsmall fragments.

Each fragment on Lagging Strand is 1000 nucleotide long calledOkazaki fragments.

Each fragment is made in 5’-3’ direction

Leading and lagging strands

Removal of RNA

primers

DNA Polymerase I removes RNA primers by virtue of

5’-3’ exonuclease activity

The resulting gaps are filled by synthesis of DNA at the3’end of neighbouring Okazaki fragment by DNA

Polymerase III

Joining of Okazaki fragments

Small nicks between the Okazaki fragments are sealed

by DNA ligase

All Okazaki fragments are joined together to form one

continuous strand

Removal of positive super coiling

Telomers

Telomers are short sequences at the end of linear

eukaryotic molecule.

DNA polymerase can not complete synthesis at 5’ end of

each strand

With each round of replication telomers are shortened

Telomer shortening is thought to be responsible for

aging.

Telomerase

Eukaryotic enzyme used to maintain telomers.

Telomrase has:

Reverse transcriptase activity (hTRT) Short RNA template complementary to DNA telomer sequence

Telomerase activity is presents in germ cells and stem cells

Somatic cells do not have telomerase activity correlates with

aging.