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Material Type: Assignment; Professor: Gardner; Class: Microbial Genetics; Subject: Molecular and Cell Biology; University: University of Illinois - Urbana-Champaign; Term: Fall 2008;
Typology: Assignments
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1. The Salmonella typhimurium strain TR248 is auxotrophic for both histidine and cysteine due to a mutation in the hisC gene and a mutation in the cysA gene. His+ revertants are found at a frequency of 1 per 10^7 cells. Cys+^ revertants are also found with a frequency of 1 per 10^7 cells. a.) How would you select for His+^ revertants only or Cys+^ revertants only? (What kind of medium would you plate the cells on?) b.) At what frequency would you expect to find revertants that are both His+^ and Cys+? How could you directly select for such double revertants? c.) His+^ Cys+^ revertants are actually found at a frequency of 1 per 10^8 cells. Propose an explanation for this result. d.) Describe a simple genetic experiment to test your hypothesis. 2. In the following table, briefly diagram or indicate the common properties of each type of mutation. Mutation Missense Nonsense Frameshift Deletion Insertion effect on DNA effect on Protein effect on Phenotype
bp 1 30 (^31 ) 61 Page 2 of 3
3. An elegant genetic experiment to determine the number of bases required to code for each amino acid took advantage of a large collection of frameshift mutations in the rII gene of phage T4 [Crick, F., L. Barnett, S. Brenner, and R. Watts-Tobin. 1961. Nature 192: 1227-1232]. The wild-type DNA and amino acid sequence corresponding to the first portion of the rII gene are shown below. ATG TAC AAT ATT AAA TGC CTG ACC AAA AAC Met tyr asn ile lys cys leu thr lys asn
glu gln ala glu ile val lys leu tyr ser
ser gly asn tyr thr gln gln glu leu ala Four frameshift mutations isolated were FCO (an insertion of an A at base 50), FC1 (a deletion of the A at base 32), FC40 (an insertion of an A at base 60), and FC88 (a deletion of the C at base 75). a.) Write out the amino acid sequence for the double mutant FCO FC1. b.) Write out the amino acid sequence for the double mutant FC1 FC40. c.) Write out the amino acid sequence for the double mutant FCO FC88. d.) Write out the amino acid sequence for the double mutant FC40 FC88. e.) The double mutants FCO FC1 and FC1 FC40 both produce functional rII protein, but FCO FC88 is inactive. What does this indicate about the structure and function of the wild-type rII protein? f.) Would the double mutant FCO, FC40 produce a functional rII protein? 4). In 1977, F. Sanger and his colleagues published the first DNA sequence of an entire genome. They determined the sequence of the phage PhiX 174 (Nature 265:687-695). One of the astonishing findings of the analysis was that the DNA sequence encoding the D gene also contained the entire coding sequence of the E gene. How could this be explained, based on your knowledge of the genetic code and protein synthesis? What would you predict would happen if you isolated a substitution mutation in the D gene that knocked out activity of the D protein?