Docsity
Docsity

Prepara tus exámenes
Prepara tus exámenes

Prepara tus exámenes y mejora tus resultados gracias a la gran cantidad de recursos disponibles en Docsity


Consigue puntos base para descargar
Consigue puntos base para descargar

Gana puntos ayudando a otros estudiantes o consíguelos activando un Plan Premium


Orientación Universidad
Orientación Universidad


alineamiento multiple, Apuntes de Biología

Asignatura: biologia, Profesor: , Carrera: Diseño de Moda, Universidad: arte-diseño

Tipo: Apuntes

2014/2015

Subido el 23/06/2015

madeleym_martinez
madeleym_martinez 🇪🇸

1 documento

1 / 3

Toggle sidebar

Esta página no es visible en la vista previa

¡No te pierdas las partes importantes!

bg1
I. Obtención de secuencias para el alineamiento múltiple utilizando BLAST
>sp|P20472|PRVA_HUMAN Parvalbumin alpha OS=Homo sapiens GN=PVALB PE=1 SV=2
MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKSADDVKKVFHMLDKDKSGFIE
EDELGFILKGFSPDARDLSAKETKMLMAAGDKDGDGKIGVDEFSTLVAES
>sp|P80079|PRVA_FELCA Parvalbumin alpha OS=Felis catus GN=PVALB PE=1 SV=2
MSMTDLLGAEDIKKAVEAFTAVDSFDYKKFFQMVGLKKKSPDDIKKVFHILDKDKSGFIE
EDELGFILKGFYPDARDLSVKETKMLMAAGDKDGDGKIDVDEFFSLVAKS
>sp|P02627|PRVA_PELES Parvalbumin alpha OS=Pelophylax esculentus PE=1 SV=1
PMTDLLAAGDISKAVSAFAAPESFNHKKFFELCGLKSKSKEIMQKVFHVLDQDQSGFIEK
EELCLILKGFTPEGRSLSDKETTALLAAGDKDGDGKIGVDEFVTLVSES
>sp|P02626|PRVA_AMPME Parvalbumin alpha OS=Amphiuma means PE=1 SV=1
SMTDVIPEADINKAIHAFKAGEAFDFKKFVHLLGLNKRSPADVTKAFHILDKDRSGYIEE
EELQLILKGFSKEGRELTDKETKDLLIKGDKDGDGKIGVDEFTSLVAES
>sp|P43305|PRVU_CHICK Parvalbumin, thymic CPV3 OS=Gallus gallus PE=1 SV=2
MSLTDILSPSDIAAALRDCQAPDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIE
EDELKYFLQRFECGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQS
>sp|Q91482|PRVB1_SALSA Parvalbumin beta 1 OS=Salmo salar PE=1 SV=1
MACAHLCKEADIKTALEACKAADTFSFKTFFHTIGFASKSADDVKKAFKVIDQDASGFIE
VEELKLFLQNFCPKARELTDAETKAFLKAGDADGDGMIGIDEFAVLVKQ
>sp|P02619|PRVB_ESOLU Parvalbumin beta OS=Esox lucius PE=1 SV=1
SFAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEED
ELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIKA
>sp|P02620|PRVB_MERME Parvalbumin beta OS=Merluccius merluccius PE=1 SV=1
AFAGILADADITAALAACKAEGSFKHGEFFTKIGLKGKSAADIKKVFGIIDQDKSDFVEE
DELKLFLQNFSAGARALTDAETATFLKAGDSDGDGKIGVEEFAAMVKG
>sp|P02622|PRVB_GADMC Parvalbumin beta OS=Gadus morhua subsp. callarias PE=1 SV=1
AFKGILSNADIKAAEAACFKEGSFDEDGFYAKVGLDAFSADELKKLFKIADEDKEGFIEE
DELKLFLIAFAADLRALTDAETKAFLKAGDSDGDGKIGVDEFGALVDKWGAKG
II. Alineamiento múltiple de secuencias utilizando ClustalW.
Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: sp|P20472|PRVA_HUMAN 110 aa
Sequence 2: sp|P80079|PRVA_FELCA 110 aa
Sequence 3: sp|P02627|PRVA_PELES 109 aa
Sequence 4: sp|P02626|PRVA_AMPME 109 aa
Sequence 5: sp|P43305|PRVU_CHICK 109 aa
Sequence 6: sp|Q91482|PRVB1_SALSA 109 aa
Sequence 7: sp|P02619|PRVB_ESOLU 107 aa
Sequence 8: sp|P02620|PRVB_MERME 108 aa
Sequence 9: sp|P02622|PRVB_GADMC 113 aa
Start of Pairwise alignments
Sequences (1:2) Aligned. Score: 87.2727
Sequences (1:3) Aligned. Score: 67.8899
Sequences (1:4) Aligned. Score: 62.3853
Sequences (1:5) Aligned. Score: 52.2936
Sequences (1:6) Aligned. Score: 50.4587
Sequences (1:7) Aligned. Score: 56.0748
Sequences (1:8) Aligned. Score: 50
Sequences (1:9) Aligned. Score: 49.0909
Sequences (2:3) Aligned. Score: 64.2202
Sequences (2:4) Aligned. Score: 61.4679
Sequences (2:5) Aligned. Score: 51.3761
pf3

Vista previa parcial del texto

¡Descarga alineamiento multiple y más Apuntes en PDF de Biología solo en Docsity!

I. Obtención de secuencias para el alineamiento múltiple utilizando BLAST

sp|P20472|PRVA_HUMAN Parvalbumin alpha OS=Homo sapiens GN=PVALB PE=1 SV= MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKSADDVKKVFHMLDKDKSGFIE EDELGFILKGFSPDARDLSAKETKMLMAAGDKDGDGKIGVDEFSTLVAES sp|P80079|PRVA_FELCA Parvalbumin alpha OS=Felis catus GN=PVALB PE=1 SV= MSMTDLLGAEDIKKAVEAFTAVDSFDYKKFFQMVGLKKKSPDDIKKVFHILDKDKSGFIE EDELGFILKGFYPDARDLSVKETKMLMAAGDKDGDGKIDVDEFFSLVAKS sp|P02627|PRVA_PELES Parvalbumin alpha OS=Pelophylax esculentus PE=1 SV= PMTDLLAAGDISKAVSAFAAPESFNHKKFFELCGLKSKSKEIMQKVFHVLDQDQSGFIEK EELCLILKGFTPEGRSLSDKETTALLAAGDKDGDGKIGVDEFVTLVSES sp|P02626|PRVA_AMPME Parvalbumin alpha OS=Amphiuma means PE=1 SV= SMTDVIPEADINKAIHAFKAGEAFDFKKFVHLLGLNKRSPADVTKAFHILDKDRSGYIEE EELQLILKGFSKEGRELTDKETKDLLIKGDKDGDGKIGVDEFTSLVAES sp|P43305|PRVU_CHICK Parvalbumin, thymic CPV3 OS=Gallus gallus PE=1 SV= MSLTDILSPSDIAAALRDCQAPDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIE EDELKYFLQRFECGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQS sp|Q91482|PRVB1_SALSA Parvalbumin beta 1 OS=Salmo salar PE=1 SV= MACAHLCKEADIKTALEACKAADTFSFKTFFHTIGFASKSADDVKKAFKVIDQDASGFIE VEELKLFLQNFCPKARELTDAETKAFLKAGDADGDGMIGIDEFAVLVKQ sp|P02619|PRVB_ESOLU Parvalbumin beta OS=Esox lucius PE=1 SV= SFAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEED ELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIKA sp|P02620|PRVB_MERME Parvalbumin beta OS=Merluccius merluccius PE=1 SV= AFAGILADADITAALAACKAEGSFKHGEFFTKIGLKGKSAADIKKVFGIIDQDKSDFVEE DELKLFLQNFSAGARALTDAETATFLKAGDSDGDGKIGVEEFAAMVKG sp|P02622|PRVB_GADMC Parvalbumin beta OS=Gadus morhua subsp. callarias PE=1 SV= AFKGILSNADIKAAEAACFKEGSFDEDGFYAKVGLDAFSADELKKLFKIADEDKEGFIEE DELKLFLIAFAADLRALTDAETKAFLKAGDSDGDGKIGVDEFGALVDKWGAKG II. Alineamiento múltiple de secuencias utilizando ClustalW. Sequence type explicitly set to Protein Sequence format is Pearson Sequence 1: sp|P20472|PRVA_HUMAN 110 aa Sequence 2: sp|P80079|PRVA_FELCA 110 aa Sequence 3: sp|P02627|PRVA_PELES 109 aa Sequence 4: sp|P02626|PRVA_AMPME 109 aa Sequence 5: sp|P43305|PRVU_CHICK 109 aa Sequence 6: sp|Q91482|PRVB1_SALSA 109 aa Sequence 7: sp|P02619|PRVB_ESOLU 107 aa Sequence 8: sp|P02620|PRVB_MERME 108 aa Sequence 9: sp|P02622|PRVB_GADMC 113 aa Start of Pairwise alignments Sequences (1:2) Aligned. Score: 87. Sequences (1:3) Aligned. Score: 67. Sequences (1:4) Aligned. Score: 62. Sequences (1:5) Aligned. Score: 52. Sequences (1:6) Aligned. Score: 50. Sequences (1:7) Aligned. Score: 56. Sequences (1:8) Aligned. Score: 50 Sequences (1:9) Aligned. Score: 49. Sequences (2:3) Aligned. Score: 64. Sequences (2:4) Aligned. Score: 61. Sequences (2:5) Aligned. Score: 51.

There are 8 groups

III. Alineamiento multiple de secuencias utilizando Tcoffee

INVESTIGACION

  1. La organización de una proteína se divide por 4 niveles estructurales llamados: Primaria, Secundaria, Terciaria y Cuaternaria. ESTRUCTURA PRIMARIA: Es la secuencia de Aminoácidos de la proteína. Indica qué Aminoácidos
  • Sequences (2:6) Aligned. Score: 48.
  • Sequences (2:7) Aligned. Score: 51.
  • Sequences (2:8) Aligned. Score: 48.
  • Sequences (2:9) Aligned. Score: 49.
  • Sequences (3:4) Aligned. Score: 60.
  • Sequences (3:5) Aligned. Score: 44.
  • Sequences (3:6) Aligned. Score: 48.
  • Sequences (3:7) Aligned. Score: 50.
  • Sequences (3:8) Aligned. Score: 47.
  • Sequences (3:9) Aligned. Score: 43.
  • Sequences (4:5) Aligned. Score: 42.
  • Sequences (4:6) Aligned. Score: 49.
  • Sequences (4:7) Aligned. Score: 46.
  • Sequences (4:8) Aligned. Score: 44.
  • Sequences (4:9) Aligned. Score: 44.
  • Sequences (5:6) Aligned. Score: 47.
  • Sequences (5:7) Aligned. Score: 51.
  • Sequences (5:8) Aligned. Score: 52.
  • Sequences (5:9) Aligned. Score: 46.
    • Sequences (6:7) Aligned. Score: 67.
    • Sequences (6:8) Aligned. Score: 59.
    • Sequences (6:9) Aligned. Score: 52.
    • Sequences (7:8) Aligned. Score: 68.
    • Sequences (7:9) Aligned. Score: 57.
    • Sequences (8:9) Aligned. Score: 63.
    • Group 1: Sequences: 2 Score:
    • Group 2: Sequences: 2 Score:
    • Group 3: Sequences: 4 Score:
    • Group 4: Sequences: 5 Score:
    • Group 5: Sequences: 2 Score:
    • Group 6: Sequences: 3 Score:
    • Group 7: Sequences: 4 Score:
    • Group 8: Sequences: 9 Score:
    • Alignment Score